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  5. GSVIVT01012225001

GSVIVT01012225001 (AFP2)


Aliases : AFP2

Description : RNA biosynthesis.transcriptional repression.AFP/NINJA transcriptional co-repressor


Gene families : OG0001010 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001010_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01012225001

Target Alias Description ECC score Gene Family Method Actions
AT1G69260 AFP1 ABI five binding protein 0.06 OrthoFinder output from all 47 species
AT3G07255 No alias No description available 0.03 OrthoFinder output from all 47 species
AT3G29575 AFP3 ABI five binding protein 3 0.08 OrthoFinder output from all 47 species
Aob_g17001 AFP3 transcriptional co-repressor *(AFP/NINJA) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g01909 AFP3 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_29524 AFP3 transcriptional co-repressor (AFP/NINJA) 0.03 OrthoFinder output from all 47 species
LOC_Os03g11550.1 AFP2, LOC_Os03g11550 transcriptional co-repressor (AFP/NINJA) 0.03 OrthoFinder output from all 47 species
LOC_Os03g30570.1 AFP2, LOC_Os03g30570 transcriptional co-repressor (AFP/NINJA) 0.08 OrthoFinder output from all 47 species
LOC_Os07g41160.1 AFP3, LOC_Os07g41160 transcriptional co-repressor (AFP/NINJA) 0.03 OrthoFinder output from all 47 species
Len_g16334 NINJA not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_16384g0010 AFP3 transcriptional co-repressor (AFP/NINJA) 0.04 OrthoFinder output from all 47 species
Msp_g37601 AFP3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08220 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo446487 AFP3 RNA biosynthesis.transcriptional repression.AFP/NINJA... 0.03 OrthoFinder output from all 47 species
Solyc02g066855.1.1 AFP3, Solyc02g066855 transcriptional co-repressor (AFP/NINJA) 0.03 OrthoFinder output from all 47 species
Solyc04g005380.3.1 AFP2, Solyc04g005380 transcriptional co-repressor (AFP/NINJA) 0.07 OrthoFinder output from all 47 species
Solyc05g012210.4.1 AFP2, Solyc05g012210 transcriptional co-repressor (AFP/NINJA) 0.03 OrthoFinder output from all 47 species
Tin_g31839 AFP3 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e035495_P001 AFP3, Zm00001e035495 transcriptional co-repressor (AFP/NINJA) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006814 sodium ion transport IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR032308 TDBD 280 344
IPR032310 NINJA_B 85 209
IPR012463 Ninja_motif 30 64
No external refs found!