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Aliases : QRT3
Description : Cell wall.pectin.modification and degradation.polygalacturonase activities.QRT3 polygalacturonase
Gene families : OG0004265 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004265_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01012139001 | |
| Cluster | HCCA: Cluster_42 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00004p00255270 | evm_27.TU.AmTr_v1... | No description available | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00102p00131940 | evm_27.TU.AmTr_v1... | Cell wall.pectin.modification and... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00319p00013650 | QRT3,... | Polygalacturonase QRT3 OS=Arabidopsis thaliana | 0.06 | OrthoFinder output from all 47 species | |
| AMTR_s03255p00000400 | QRT3,... | Cell wall.pectin.modification and... | 0.05 | OrthoFinder output from all 47 species | |
| AMTR_s05553p00004300 | QRT3,... | Cell wall.pectin.modification and... | 0.05 | OrthoFinder output from all 47 species | |
| AT4G20050 | QRT3 | Pectin lyase-like superfamily protein | 0.11 | OrthoFinder output from all 47 species | |
| Aop_g67503 | QRT3 | polygalacturonase *(QRT3) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Azfi_s0006.g010377 | QRT3 | polygalacturonase *(QRT3) & original description: CDS=62-1624 | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.21G028400.1 | QRT3, Ceric.21G028400 | polygalacturonase *(QRT3) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g16097 | QRT3 | polygalacturonase *(QRT3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g31759 | QRT3 | polygalacturonase *(QRT3) & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| LOC_Os04g52320.1 | QRT3, LOC_Os04g52320 | polygalacturonase (QRT3) | 0.05 | OrthoFinder output from all 47 species | |
| Len_g58007 | QRT3 | polygalacturonase *(QRT3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_739517g0010 | No alias | no hits & (original description: none) | 0.05 | OrthoFinder output from all 47 species | |
| MA_917578g0010 | QRT3 | polygalacturonase (QRT3) | 0.06 | OrthoFinder output from all 47 species | |
| Msp_g12922 | QRT3 | polygalacturonase *(QRT3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g44003 | QRT3 | polygalacturonase *(QRT3) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Nbi_g29972 | QRT3 | polygalacturonase *(QRT3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g13886 | QRT3 | polygalacturonase *(QRT3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0027.g009816 | QRT3 | polygalacturonase *(QRT3) & original description: CDS=14-1468 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g40884 | No alias | polygalacturonase *(QRT3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Solyc02g068400.3.1 | QRT3, Solyc02g068400 | polygalacturonase (QRT3) | 0.15 | OrthoFinder output from all 47 species | |
| Spa_g33866 | QRT3 | polygalacturonase *(QRT3) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Spa_g43106 | QRT3 | polygalacturonase *(QRT3) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Tin_g44469 | QRT3 | polygalacturonase *(QRT3) & original description: none | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEP | HCCA |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | HCCA |
| BP | GO:0006810 | transport | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| MF | GO:0016787 | hydrolase activity | IEP | HCCA |
| MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | IEP | HCCA |
| MF | GO:0030599 | pectinesterase activity | IEP | HCCA |
| BP | GO:0042545 | cell wall modification | IEP | HCCA |
| BP | GO:0045229 | external encapsulating structure organization | IEP | HCCA |
| BP | GO:0051179 | localization | IEP | HCCA |
| BP | GO:0051234 | establishment of localization | IEP | HCCA |
| MF | GO:0052689 | carboxylic ester hydrolase activity | IEP | HCCA |
| BP | GO:0055085 | transmembrane transport | IEP | HCCA |
| BP | GO:0071554 | cell wall organization or biogenesis | IEP | HCCA |
| BP | GO:0071555 | cell wall organization | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |