1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01012138001

GSVIVT01012138001


Description : Cell wall.pectin.modification and degradation.polygalacturonase activities.QRT3 polygalacturonase


Gene families : OG0004265 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004265_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01012138001

Target Alias Description ECC score Gene Family Method Actions
Aev_g16422 QRT3 polygalacturonase *(QRT3) & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g67503 QRT3 polygalacturonase *(QRT3) & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.21G028400.1 QRT3, Ceric.21G028400 polygalacturonase *(QRT3) & original description:... 0.01 OrthoFinder output from all 47 species
Dde_g31759 QRT3 polygalacturonase *(QRT3) & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01029528001 QRT3 Cell wall.pectin.modification and... 0.02 OrthoFinder output from all 47 species
LOC_Os04g52320.1 QRT3, LOC_Os04g52320 polygalacturonase (QRT3) 0.02 OrthoFinder output from all 47 species
Len_g58007 QRT3 polygalacturonase *(QRT3) & original description: none 0.01 OrthoFinder output from all 47 species
MA_10425986g0020 QRT3 polygalacturonase (QRT3) 0.02 OrthoFinder output from all 47 species
MA_23603g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_8818361g0010 QRT3 polygalacturonase (QRT3) 0.03 OrthoFinder output from all 47 species
MA_917578g0010 QRT3 polygalacturonase (QRT3) 0.01 OrthoFinder output from all 47 species
Sam_g40884 No alias polygalacturonase *(QRT3) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA

No InterPro domains available for this sequence

No external refs found!