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  5. GSVIVT01011588001

GSVIVT01011588001 (MS1)


Aliases : MS1

Description : RNA biosynthesis.transcriptional activation.PHD finger transcription factor


Gene families : OG0003400 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003400_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01011588001
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Azfi_s1017.g095263 No alias not classified & original description: CDS=1-285 0.03 OrthoFinder output from all 47 species
Ceric.25G054900.1 MMD1, Ceric.25G054900 transcriptional regulator *(MS1) & original description:... 0.03 OrthoFinder output from all 47 species
LOC_Os03g50780.1 MMD1, LOC_Os03g50780 MMD1/DUET meiotic recombination regulating protein. PHD... 0.02 OrthoFinder output from all 47 species
LOC_Os09g27620.1 MS1, LOC_Os09g27620 MMD1/DUET meiotic recombination regulating protein. PHD... 0.12 OrthoFinder output from all 47 species
Mp3g06700.1 MMD1 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
Ore_g40819 MMD1 transcriptional regulator *(MS1) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0168.g024273 MS1 transcriptional regulator *(MS1) & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s1844.g028194 MMD1 PHD finger transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Solyc04g008420.1.1 MS1, Solyc04g008420 MMD1/DUET meiotic recombination regulating protein. PHD... 0.16 OrthoFinder output from all 47 species
Zm00001e034314_P001 MS1, Zm00001e034314 MMD1/DUET meiotic recombination regulating protein. PHD... 0.15 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004347 glucose-6-phosphate isomerase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006094 gluconeogenesis IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0019319 hexose biosynthetic process IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046364 monosaccharide biosynthetic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0050662 obsolete coenzyme binding IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 591 637
No external refs found!