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  5. GSVIVT01010769001

GSVIVT01010769001 (emb1507)


Aliases : emb1507

Description : DExH-box ATP-dependent RNA helicase DExH12 OS=Arabidopsis thaliana


Gene families : OG0001175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001175_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01010769001
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00114710 emb1507,... RNA processing.RNA splicing.spliceosome... 0.15 OrthoFinder output from all 47 species
AMTR_s00077p00041680 emb1507,... DExH-box ATP-dependent RNA helicase DExH12... 0.01 OrthoFinder output from all 47 species
AMTR_s00110p00146400 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH14... 0.03 OrthoFinder output from all 47 species
AT1G20960 emb1507 U5 small nuclear ribonucleoprotein helicase, putative 0.04 OrthoFinder output from all 47 species
AT5G61140 No alias U5 small nuclear ribonucleoprotein helicase 0.05 OrthoFinder output from all 47 species
Adi_g117139 emb1507 RNA helicase *(Brr2) & original description: none 0.08 OrthoFinder output from all 47 species
Aev_g29910 No alias RNA helicase *(Brr2) & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g04355 emb1507 RNA helicase *(Brr2) & original description: none 0.08 OrthoFinder output from all 47 species
Als_g01991 emb1507 RNA helicase *(Brr2) & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g40053 emb1507 RNA helicase *(Brr2) & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g08117 emb1507 RNA helicase *(Brr2) & original description: none 0.1 OrthoFinder output from all 47 species
Aop_g09018 No alias RNA helicase *(Brr2) & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene33378.t1 Aspi01Gene33378 RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0068.g036403 No alias RNA helicase *(Brr2) & original description: CDS=166-5640 0.03 OrthoFinder output from all 47 species
Cba_g05989 emb1507 RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.1Z263400.1 Ceric.1Z263400 RNA helicase *(Brr2) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.31G022500.1 emb1507, Ceric.31G022500 RNA helicase *(Brr2) & original description:... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000865.27 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000865.28 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000865.29 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.01 OrthoFinder output from all 47 species
Cre17.g744147 emb1507 RNA processing.RNA splicing.spliceosome... 0.07 OrthoFinder output from all 47 species
Dac_g02389 emb1507 RNA helicase *(Brr2) & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g12553 No alias RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12406 No alias RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g19260 emb1507 RNA helicase *(Brr2) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g12876 emb1507 RNA helicase *(Brr2) & original description: none 0.09 OrthoFinder output from all 47 species
Gb_18049 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.05 OrthoFinder output from all 47 species
Gb_27895 emb1507 RNA helicase (Brr2) 0.12 OrthoFinder output from all 47 species
LOC_Os02g01740.1 emb1507, LOC_Os02g01740 RNA helicase (Brr2) 0.08 OrthoFinder output from all 47 species
LOC_Os03g11470.1 LOC_Os03g11470 DExH-box ATP-dependent RNA helicase DExH14... 0.03 OrthoFinder output from all 47 species
Len_g08641 emb1507 RNA helicase *(Brr2) & original description: none 0.08 OrthoFinder output from all 47 species
Len_g21125 No alias RNA helicase *(Brr2) & original description: none 0.08 OrthoFinder output from all 47 species
Lfl_g05048 emb1507 RNA helicase *(Brr2) & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g09106 No alias RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
MA_10429486g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.04 OrthoFinder output from all 47 species
MA_10434882g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.03 OrthoFinder output from all 47 species
MA_10434991g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.06 OrthoFinder output from all 47 species
MA_8113344g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.07 OrthoFinder output from all 47 species
MA_81219g0020 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.12 OrthoFinder output from all 47 species
MA_81219g0030 emb1507 DExH-box ATP-dependent RNA helicase DExH12... 0.13 OrthoFinder output from all 47 species
MA_823844g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.05 OrthoFinder output from all 47 species
MA_930633g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.07 OrthoFinder output from all 47 species
Mp1g06890.1 emb1507 RNA helicase (Brr2) 0.09 OrthoFinder output from all 47 species
Ore_g25813 No alias RNA helicase *(Brr2) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09832 emb1507 RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09250 emb1507 RNA helicase *(Brr2) & original description: none 0.05 OrthoFinder output from all 47 species
Smo144158 emb1507 RNA processing.RNA splicing.spliceosome... 0.08 OrthoFinder output from all 47 species
Solyc06g082100.4.1 emb1507, Solyc06g082100 RNA helicase (Brr2) 0.05 OrthoFinder output from all 47 species
Spa_g52342 emb1507 RNA helicase *(Brr2) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07743 emb1507 RNA helicase *(Brr2) & original description: none 0.07 OrthoFinder output from all 47 species
Zm00001e035676_P001 emb1507, Zm00001e035676 RNA helicase (Brr2) 0.1 OrthoFinder output from all 47 species
Zm00001e038727_P001 Zm00001e038727 DExH-box ATP-dependent RNA helicase DExH14... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
InterPro domains Description Start Stop
IPR004179 Sec63-dom 1339 1392
IPR004179 Sec63-dom 1212 1333
IPR011545 DEAD/DEAH_box_helicase_dom 356 531
IPR004179 Sec63-dom 808 1022
No external refs found!