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  5. GSVIVT01010209001

GSVIVT01010209001 (ATPRP40C, PRP40C)


Aliases : ATPRP40C, PRP40C

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).PRP40C pre-mRNA-processing protein


Gene families : OG0006310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006310_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01010209001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00102340 ATPRP40C,... RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Adi_g011526 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.03 OrthoFinder output from all 47 species
Adi_g086424 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.03 OrthoFinder output from all 47 species
Aev_g19827 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.03 OrthoFinder output from all 47 species
Ala_g06832 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.07 OrthoFinder output from all 47 species
Als_g05123 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.04 OrthoFinder output from all 47 species
Aop_g08237 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0066.g036110 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.04 OrthoFinder output from all 47 species
Ceric.13G036100.1 ATPRP40C,... pre-mRNA-processing protein *(PRP40C) & original... 0.04 OrthoFinder output from all 47 species
Cre09.g393551 ATPRP40C, PRP40C No description available 0.02 OrthoFinder output from all 47 species
Dcu_g14070 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.04 OrthoFinder output from all 47 species
Dde_g16444 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g19140 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.03 OrthoFinder output from all 47 species
LOC_Os10g34380.1 ATPRP40C,... pre-mRNA-processing protein (PRP40C) 0.09 OrthoFinder output from all 47 species
Len_g09020 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g02397 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.11 OrthoFinder output from all 47 species
Mp5g09830.1 ATPRP40C, PRP40C pre-mRNA-processing protein (PRP40C) 0.03 OrthoFinder output from all 47 species
Msp_g16215 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.04 OrthoFinder output from all 47 species
Nbi_g03206 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.03 OrthoFinder output from all 47 species
Ore_g35746 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.05 OrthoFinder output from all 47 species
Pir_g11410 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.05 OrthoFinder output from all 47 species
Sam_g10525 No alias pre-mRNA-processing protein *(PRP40C) & original... 0.02 OrthoFinder output from all 47 species
Sam_g25068 No alias pre-mRNA-processing protein *(PRP40C) & original... 0.02 OrthoFinder output from all 47 species
Smo439648 ATPRP40C, PRP40C RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
Solyc04g008700.3.1 ATPRP40C,... pre-mRNA-processing protein (PRP40C) 0.09 OrthoFinder output from all 47 species
Spa_g30945 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.06 OrthoFinder output from all 47 species
Zm00001e012643_P002 ATPRP40C,... pre-mRNA-processing protein (PRP40C) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002713 FF_domain 649 694
IPR002713 FF_domain 884 935
IPR002713 FF_domain 781 829
IPR002713 FF_domain 713 760
IPR001202 WW_dom 424 450
No external refs found!