1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01010091001

GSVIVT01010091001 (cm-3, CM3)


Aliases : cm-3, CM3

Description : Amino acid metabolism.biosynthesis.shikimate family.phenylalanine and tyrosine.chorismate mutase


Gene families : OG0003718 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003718_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01010091001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00058p00113540 ATCM1, CM1,... Amino acid metabolism.biosynthesis.shikimate... 0.02 OrthoFinder output from all 47 species
Adi_g078510 ATCM1, CM1 EC_5.4 intramolecular transferase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g10596 ATCM1, CM1 EC_5.4 intramolecular transferase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g24891 cm-3, CM3 EC_5.4 intramolecular transferase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01035962001 ATCM2, CM2 Amino acid metabolism.biosynthesis.shikimate... 0.04 OrthoFinder output from all 47 species
Gb_37545 ATCM1, CM1 chorismate mutase 0.01 OrthoFinder output from all 47 species
LOC_Os12g38900.1 ATCM1, CM1,... chorismate mutase 0.03 OrthoFinder output from all 47 species
MA_134613g0010 ATCM1, CM1 chorismate mutase 0.02 OrthoFinder output from all 47 species
Ore_g28353 cm-3, CM3 EC_5.4 intramolecular transferase & original description: none 0.03 OrthoFinder output from all 47 species
Smo77309 ATCM1, CM1 Amino acid metabolism.biosynthesis.shikimate... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004451 isocitrate lyase activity IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005985 sucrose metabolic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
MF GO:0016157 sucrose synthase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016833 oxo-acid-lyase activity IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA

No InterPro domains available for this sequence

No external refs found!