1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01010035001

GSVIVT01010035001 (ACCD)


Aliases : ACCD

Description : RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor


Gene families : OG0000859 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000859_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01010035001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00110320 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C3H zinc... 0.06 OrthoFinder output from all 47 species
AMTR_s00154p00087040 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AT3G18640 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.09 OrthoFinder output from all 47 species
Adi_g020080 No alias component *(FES1) of FRI-C transcription effector... 0.07 OrthoFinder output from all 47 species
Adi_g051624 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g086262 No alias component *(FES1) of FRI-C transcription effector... 0.02 OrthoFinder output from all 47 species
Adi_g086845 No alias component *(FES1) of FRI-C transcription effector... 0.06 OrthoFinder output from all 47 species
Ala_g14556 No alias component *(FES1) of FRI-C transcription effector... 0.1 OrthoFinder output from all 47 species
Ala_g33431 No alias component *(FES1) of FRI-C transcription effector... 0.05 OrthoFinder output from all 47 species
Ala_g38718 No alias component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
Als_g05138 No alias component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
Als_g27332 No alias component *(FES1) of FRI-C transcription effector... 0.07 OrthoFinder output from all 47 species
Aob_g22679 No alias component *(FES1) of FRI-C transcription effector... 0.08 OrthoFinder output from all 47 species
Aob_g28684 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08771 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Aop_g31626 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Aspi01Gene00676.t1 Aspi01Gene00676 component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
Ceric.09G003600.1 Ceric.09G003600 component *(FES1) of FRI-C transcription effector... 0.05 OrthoFinder output from all 47 species
Ceric.20G066500.1 Ceric.20G066500 component *(FES1) of FRI-C transcription effector... 0.1 OrthoFinder output from all 47 species
Ceric.20G084000.1 Ceric.20G084000 component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Ceric.29G050700.1 Ceric.29G050700 component *(FES1) of FRI-C transcription effector... 0.08 OrthoFinder output from all 47 species
Cre01.g003450 No alias No description available 0.03 OrthoFinder output from all 47 species
Dac_g06929 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Dcu_g07178 No alias component *(FES1) of FRI-C transcription effector... 0.09 OrthoFinder output from all 47 species
Ehy_g18865 No alias component *(FES1) of FRI-C transcription effector... 0.05 OrthoFinder output from all 47 species
Ehy_g26937 No alias component *(FES1) of FRI-C transcription effector... 0.07 OrthoFinder output from all 47 species
Gb_00875 No alias C3H zinc finger transcription factor 0.06 OrthoFinder output from all 47 species
Gb_19122 No alias C3H zinc finger transcription factor 0.06 OrthoFinder output from all 47 species
Gb_26302 No alias C3H zinc finger transcription factor 0.08 OrthoFinder output from all 47 species
LOC_Os03g11580.1 LOC_Os03g11580 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os05g41790.1 LOC_Os05g41790 C3H zinc finger transcription factor 0.07 OrthoFinder output from all 47 species
LOC_Os08g04170.1 LOC_Os08g04170 C3H zinc finger transcription factor 0.12 OrthoFinder output from all 47 species
Len_g20647 No alias component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
Len_g22996 No alias component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
Len_g31683 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Lfl_g05738 No alias component *(FES1) of FRI-C transcription effector... 0.07 OrthoFinder output from all 47 species
Lfl_g29094 No alias component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
MA_10435667g0010 No alias Zinc finger CCCH domain-containing protein 38... 0.06 OrthoFinder output from all 47 species
MA_111475g0010 No alias Zinc finger CCCH domain-containing protein 55 OS=Oryza... 0.09 OrthoFinder output from all 47 species
MA_111475g0020 No alias no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
MA_321233g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_8408g0030 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp1g05400.1 No alias Zinc finger CCCH domain-containing protein 55 OS=Oryza... 0.09 OrthoFinder output from all 47 species
Msp_g15688 No alias component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
Msp_g19470 No alias component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
Nbi_g04479 No alias component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
Nbi_g33981 No alias component *(FES1) of FRI-C transcription effector... 0.02 OrthoFinder output from all 47 species
Ore_g08246 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g13140 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25353 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Ore_g30501 No alias component *(FES1) of FRI-C transcription effector... 0.06 OrthoFinder output from all 47 species
Ore_g37073 No alias component *(FES1) of FRI-C transcription effector... 0.05 OrthoFinder output from all 47 species
Ore_g44437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g18853 No alias component *(FES1) of FRI-C transcription effector... 0.05 OrthoFinder output from all 47 species
Pir_g41479 No alias component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
Pir_g61674 No alias component *(FES1) of FRI-C transcription effector... 0.05 OrthoFinder output from all 47 species
Ppi_g08786 No alias component *(FES1) of FRI-C transcription effector... 0.05 OrthoFinder output from all 47 species
Ppi_g11003 No alias component *(FES1) of FRI-C transcription effector... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000565 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Sam_g30142 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Sam_g39875 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Smo439131 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc03g006350.3.1 FES1, Solyc03g006350 C3H zinc finger transcription factor 0.06 OrthoFinder output from all 47 species
Solyc04g064800.4.1 Solyc04g064800 C3H zinc finger transcription factor 0.08 OrthoFinder output from all 47 species
Solyc06g069440.3.1 Solyc06g069440 Zinc finger CCCH domain-containing protein 38... 0.04 OrthoFinder output from all 47 species
Spa_g07473 No alias component *(FES1) of FRI-C transcription effector... 0.02 OrthoFinder output from all 47 species
Spa_g08435 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Spa_g17866 No alias component *(FES1) of FRI-C transcription effector... 0.04 OrthoFinder output from all 47 species
Spa_g41981 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g53143 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g10851 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Tin_g20286 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Tin_g26553 No alias component *(FES1) of FRI-C transcription effector... 0.03 OrthoFinder output from all 47 species
Zm00001e040314_P001 Zm00001e040314 C3H zinc finger transcription factor 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004000 adenosine deaminase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006382 adenosine to inosine editing IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
BP GO:0016553 base conversion or substitution editing IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 405 424
No external refs found!