Sequence Description Alias PCC hrr GSVIVT01014783001 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA decapping complex.VCS scaffold component VCS 0.8958653023647482 1 GSVIVT01018223001 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-HCa-type E3 ligase RDO4, HUB1 0.8855623671169096 2 GSVIVT01009302001 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).PRP40A pre-mRNA-processing protein ATPRP40A, PRP40A 0.8734022034463901 4 GSVIVT01011972001 Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear lamina.CRWN lamin-like protein LINC3 0.8719980078674363 4 GSVIVT01036698001 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).nuclear basket.NUA nucleoporin NUA, AtTPR 0.8692630643809577 22 GSVIVT01031306001 Chromatin organisation.histone chaperone activities.FACT histone chaperone complex.SPT16 component SPT16 0.8680833047918336 6 GSVIVT01037455001 RNA biosynthesis.transcriptional activation.FAR1 transcription factor FRS3 0.8677382601984062 7 GSVIVT01033327001 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I catalytic subunits.subunit 1 NRPA1 0.8669385612429182 20 GSVIVT01034015001 RNA processing.RNA 5-end cap adding.mRNA capping enzyme 0.8624966316090287 9 GSVIVT01016353001 RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.UPF2 component 0.8622093642945563 10 GSVIVT01017791001 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Iswi chromatin remodeling factor CHR17 0.8605281156838416 11 GSVIVT01009695001 0.8602293282894733 18 GSVIVT01035985001 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).SR140 snRNP-associated protein 0.8578241668697272 13 GSVIVT01005970001 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B3 component 0.8568941855680073 29 GSVIVT01012117001 RNA biosynthesis.transcriptional activation.PHD finger transcription factor PKR1, CHR4 0.8564996590122536 15 GSVIVT01017821001 0.8541712196184006 16 GSVIVT01016344001 Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana 0.8539435803852276 17 GSVIVT01031411001 RNA biosynthesis.transcriptional activation.PHD finger transcription factor 0.8526268910946364 18 GSVIVT01036517001 Protein phosphatase 1 regulatory inhibitor subunit PPP1R8 homolog OS=Arabidopsis thaliana 0.8513252906896834 19 GSVIVT01014643001 0.8509207076573797 20 GSVIVT01019046001 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class V/Su(var) histone methyltransferase component 0.849408315357409 21 GSVIVT01009365001 RNA biosynthesis.RNA polymerase II-dependent transcription.pre-initiation complex.TFIId basal transcription regulation complex.TAF4 component TAF4, TAF4B 0.8468294874259749 22 GSVIVT01030051001 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.NUP133 scaffold nucleoporin 0.8458275349820565 50 GSVIVT01033382001 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT3/5 component 0.844963650884343 24 GSVIVT01035878001 Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana 0.844685652845386 25 GSVIVT01012004001 RNA processing.organelle machineries.RNA modification.tRNA adenine deamination.chloroplast-tRNA adenosine deaminase TADA, ATTADA 0.8443613046208327 26 GSVIVT01024062001 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc90/Toc120/Toc132/Toc159 component ATTOC132, TOC132 0.8442844206921601 27 GSVIVT01007703001 Protein MODIFIER OF SNC1 1 OS=Arabidopsis thaliana MOS1 0.8434990541802523 28 GSVIVT01034370001 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Rad5/16-like group.Ris1 chromatin remodeling factor 0.8430196701017454 29 GSVIVT01033178001 COP1-interactive protein 1 OS=Arabidopsis thaliana 0.8397022881257041 30 GSVIVT01014219001 RNA biosynthesis.transcriptional activation.PHD finger transcription factor 0.8393508961461164 31 GSVIVT01029863001 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsis thaliana 0.8386507920167094 32 GSVIVT01004707001 Vesicle trafficking.Coat protein II (COPII) coatomer machinery.Sec16 Sar1-GTPase-regulating protein 0.8386468465629698 33 GSVIVT01009206001 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.HECT E3 monomeric ligase UPL2 0.8370503757712382 34 GSVIVT01021121001 0.8365076199078244 35 GSVIVT01017770001 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor ATALY3, ALY3 0.8361662794273685 36 GSVIVT01032455001 Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana 0.8358828298634311 37 GSVIVT01023952001 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.nuclear import and assembly regulation.MINIYO regulator protein 0.8349921193549223 38 GSVIVT01022281001 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.8331896768239141 39 GSVIVT01035731001 0.83317633329223 40 GSVIVT01003381001 Solute transport.primary active transport.P-type ATPase superfamily.P4 family.phospholipid flippase complex.ALA P4-type ATPase component ALA3 0.8329668829130349 41 GSVIVT01000234001 Solute transport.primary active transport.P-type ATPase superfamily.P5 family.MIA P5-type cation-transporting ATPase PDR2, MIA 0.8327833413589413 42 GSVIVT01014233001 Transcription factor GTE4 OS=Arabidopsis thaliana GTE4 0.831007189851263 43 GSVIVT01032627001 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX-2 mRNP trafficking complex.GANP/SAC3 scaffold component 0.8301300882787377 44 GSVIVT01000253001 Chromatin organisation.histone modifications.histone deacetylation.histone deacetylase machineries.HDC1/Rxt3 associated component 0.8287510119115407 46 GSVIVT01011619001 RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.THO subcomplex.THOC2/Tho2 component THO2, AtTHO2 0.8280925863016722 50 GSVIVT01007885001 0.8280141934630446 54 GSVIVT01022300001 RNA processing.RNA decay.exosome complex.associated co-factors.Dis3/RRP44 exoribonuclease EMB2763 0.8274019981157774 48 GSVIVT01001899001 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease ATUBP5, UBP5, PDE323 0.8263694645693396 49 GSVIVT01035963001 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol V catalytic subunits.subunit 2 DRD2, NRPE2, NRPD2A, NRPD2, DMS2 0.826277796767128 50 GSVIVT01005913001 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class V/Su(var) histone methyltransferase component SUVH5, SGD9 0.825155165128778 51 GSVIVT01030649001 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class III/Trithorax histone methyltransferase component SDG2, ATXR3 0.8245109109503653 59 GSVIVT01025385001 Protein modification.phosphorylation.CK kinase superfamily.MLK protein kinase 0.8243153512605529 53 GSVIVT01026496001 Phosphatidylinositol 4-kinase beta 1 OS=Arabidopsis thaliana PI4KBETA1, PI-4KBETA1 0.8237196200543281 54 GSVIVT01028137001 DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana 0.8229521112776469 55 GSVIVT01012163001 Polyadenylate-binding protein 2 OS=Arabidopsis thaliana 0.8229128695588739 56 GSVIVT01012049001 RNA biosynthesis.transcriptional activation.HUA2 transcription factor HUA2 0.8216377064328614 57 GSVIVT01033231001 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Swr1-like group.Ino80 chromatin remodeling factor ATINO80, INO80 0.8212519496230262 78 GSVIVT01022139001 0.8212086672741029 59 GSVIVT01007327001 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin establishment.PDS5 cohesin cofactor 0.8204146065776479 60 GSVIVT01008087001 DDT domain-containing protein DDR4 OS=Arabidopsis thaliana 0.8203289645884708 61 GSVIVT01005813001 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.ELYS scaffold nucleoporin HOS1 0.8183865059914373 74 GSVIVT01020543001 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 2 EMB1989, RPB2, NRPB2 0.8179025160468346 64 GSVIVT01016885001 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.PP2A phosphatase complexes.B-type regulatory component ATB BETA 0.8177308560246261 65 GSVIVT01026206001 Protein degradation.26S proteasome.regulatory particle.non-ATPase subunits.RPN2 regulatory component 0.8160607797402846 85 GSVIVT01002824001 0.8151301993630194 67 GSVIVT01021502001 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.CUL4-DDB1 ubiquitination complexes.CUL4 scaffold component ATCUL4, CUL4 0.8148394812599496 68 GSVIVT01034941001 emb1441 0.8144104296116331 70 GSVIVT01011020001 Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.SCC3 component SCC3, ATSCC3 0.8139953445766043 71 GSVIVT01010769001 DExH-box ATP-dependent RNA helicase DExH12 OS=Arabidopsis thaliana emb1507 0.8127271948816862 72 GSVIVT01025725001 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor TKI1 0.8124860945356916 73 GSVIVT01020008001 Cullin-3A OS=Arabidopsis thaliana ATCUL3A, ATCUL3, CUL3A, CUL3 0.8118804911769777 74 GSVIVT01034601001 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).nuclear basket.NUP1/NUP136 nucleoporin 0.8102674137893051 75 GSVIVT01032137001 Protein OBERON 4 OS=Arabidopsis thaliana 0.809556702383949 76 GSVIVT01000245001 Chromatin organisation.DNA methylation.non-canonical RNA-directed DNA methylation.SGS3 stabilization factor ATSGS3, SGS3 0.8095287218302955 77 GSVIVT01030107001 Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana 0.8085129641705922 79 GSVIVT01020162001 RNA processing.RNA modification.mRNA methylation.adenosine N6-methyltransferase complex.VIR regulatory component EMB2016 0.8058893134178475 80 GSVIVT01024708001 Vesicle trafficking.clathrin coated vesicle (CCV) machinery.clathrin triskelion.heavy chain 0.8056382606301654 88 GSVIVT01038625001 0.8051393579372507 97 GSVIVT01008805001 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.class II/ASH1 histone methyltransferase component LAZ2, CCR1, ASHH2, EFS, SDG8 0.8049719761354914 83 GSVIVT01038520001 0.804581262675166 84 GSVIVT01026952001 Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Snf2 chromatin remodeling factor CHA2, CHR2, BRM, ATBRM 0.8041423271722672 85 GSVIVT01006714001 RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.SYF1/MAC9 component 0.8041052034999978 86 GSVIVT01029563001 Solute transport.primary active transport.VHP PPase family.VHP2 proton-translocating pyrophosphatase VHP2;2, AtVHP2;2 0.8034767200786785 87 GSVIVT01016590001 RNA biosynthesis.RNA polymerase II-dependent transcription.ELONGATOR transcription elongation complex.ELP1 component ABO1, ELO2 0.8034501532866033 88 GSVIVT01010345001 0.8033540748424102 89 GSVIVT01007689001 Cell division cycle protein 48 homolog OS=Glycine max 0.8026705739621965 90 GSVIVT01007917001 0.8020621843531235 91 GSVIVT01020844001 Vesicle trafficking.target membrane tethering.HOPS/CORVET membrane tethering complexes.VPS16/VCL1 component VCL1, EMB258, MAN 0.8018747131465908 92 GSVIVT01035813001 Protein modification.protein folding and quality control.protein folding catalyst activities.Cyclophilin protein folding catalyst 0.8015579821731331 94 GSVIVT01020936001 0.8004744651041573 96 GSVIVT01025852001 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B1 component 0.7996898359987927 97 GSVIVT01019537001 0.7996166106329838 98 GSVIVT01023222001 Enzyme classification.EC_6 ligases.EC_6.1 ligase forming carbon-oxygen bond(50.6.1 : 621.9) & Leucine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana 0.7990717343826702 99 GSVIVT01009356001 0.79906911052875 100