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  5. GSVIVT01009386001

GSVIVT01009386001 (APUM12, PUM12)


Aliases : APUM12, PUM12

Description : Pumilio homolog 12 OS=Arabidopsis thaliana


Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01009386001
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
Aev_g13809 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g18476 APUM12, PUM12 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_24858 APUM12, PUM12 Pumilio homolog 12 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_6394g0010 APUM12, PUM12 Pumilio homolog 12 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Ore_g32957 APUM12, PUM12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g38740 PUM7, APUM7 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006658 phosphatidylserine metabolic process IEP HCCA
BP GO:0006659 phosphatidylserine biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 52 73
IPR001313 Pumilio_RNA-bd_rpt 90 122
No external refs found!