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Aliases : AFB5
Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.SKP1-CUL1-FBX (SCF) E3 ligase complexes.F-BOX substrate adaptor components.FBX component
Gene families : OG0000211 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000211_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01009126001 | |
| Cluster | HCCA: Cluster_28 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00016p00126140 | AFB2,... | Protein degradation.peptide tagging.Ubiquitin... | 0.03 | OrthoFinder output from all 47 species | |
| AT1G12820 | AFB3 | auxin signaling F-box 3 | 0.04 | OrthoFinder output from all 47 species | |
| AT4G03190 | AFB1, ATGRH1, GRH1 | GRR1-like protein 1 | 0.03 | OrthoFinder output from all 47 species | |
| AT5G49980 | AFB5 | auxin F-box protein 5 | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g001615 | COI1 | component *(COI) of jasmonic acid receptor complex &... | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g023634 | AFB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g056234 | AFB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g057088 | AFB2 | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g107960 | TIR1 | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g112628 | AFB2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g04857 | AFB2 | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g05454 | COI1 | component *(COI) of jasmonic acid receptor complex &... | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g07494 | COI1 | component *(COI) of jasmonic acid receptor complex &... | 0.04 | OrthoFinder output from all 47 species | |
| Als_g01939 | COI1 | component *(COI) of jasmonic acid receptor complex &... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g18642 | TIR1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g28117 | AFB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g03539 | COI1 | component *(COI) of jasmonic acid receptor complex &... | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g11099 | TIR1 | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g24321 | TIR1 | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene00663.t1 | TIR1, Aspi01Gene00663 | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene00665.t1 | AFB2, Aspi01Gene00665 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene06540.t1 | AFB2, Aspi01Gene06540 | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene17403.t1 | COI1, Aspi01Gene17403 | component *(COI) of jasmonic acid receptor complex &... | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g13244 | AFB2 | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g01586 | TIR1 | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g03881 | AFB2 | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g06397 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g07930 | TIR1 | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01033011001 | AFB2 | Protein degradation.peptide tagging.Ubiquitin... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_07237 | COI1 | Coronatine-insensitive protein homolog 1b OS=Oryza... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_35123 | AFB5 | component TIR1/AFB of auxin receptor complex. component... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g63420.1 | COI1, LOC_Os01g63420 | component COI of jasmonic acid receptor complex | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os05g37690.1 | COI1, LOC_Os05g37690 | component COI of jasmonic acid receptor complex | 0.02 | OrthoFinder output from all 47 species | |
| Len_g15985 | COI1 | component *(COI) of jasmonic acid receptor complex &... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g06224 | AFB2 | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... | 0.03 | OrthoFinder output from all 47 species | |
| MA_10428988g0010 | COI1 | component COI of jasmonic acid receptor complex | 0.03 | OrthoFinder output from all 47 species | |
| MA_108477g0010 | COI1 | component COI of jasmonic acid receptor complex | 0.04 | OrthoFinder output from all 47 species | |
| MA_15842g0010 | TIR1 | component TIR1/AFB of auxin receptor complex. component... | 0.03 | OrthoFinder output from all 47 species | |
| MA_78902g0010 | AFB5 | component TIR1/AFB of auxin receptor complex | 0.04 | OrthoFinder output from all 47 species | |
| MA_92309g0010 | TIR1 | component TIR1/AFB of auxin receptor complex. component... | 0.02 | OrthoFinder output from all 47 species | |
| Mp2g26590.1 | COI1 | component COI of jasmonic acid receptor complex | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g04893 | COI1 | component *(COI) of jasmonic acid receptor complex &... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g04476 | TIR1 | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g01684 | AFB2 | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g15041 | AFB2 | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g05252 | COI1 | component *(COI) of jasmonic acid receptor complex &... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g04852 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g28126 | COI1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g32265 | AFB2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g50974 | AFB2 | substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e026935_P001 | COI1, Zm00001e026935 | component COI of jasmonic acid receptor complex | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e027505_P001 | TIR1, Zm00001e027505 | component TIR1/AFB of auxin receptor complex. component... | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | HCCA |
| MF | GO:0004672 | protein kinase activity | IEP | HCCA |
| MF | GO:0005337 | nucleoside transmembrane transporter activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0006468 | protein phosphorylation | IEP | HCCA |
| BP | GO:0006793 | phosphorus metabolic process | IEP | HCCA |
| BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0015858 | nucleoside transport | IEP | HCCA |
| BP | GO:0015931 | nucleobase-containing compound transport | IEP | HCCA |
| MF | GO:0015932 | nucleobase-containing compound transmembrane transporter activity | IEP | HCCA |
| MF | GO:0016301 | kinase activity | IEP | HCCA |
| BP | GO:0016310 | phosphorylation | IEP | HCCA |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | HCCA |
| MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| BP | GO:0036211 | protein modification process | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0043412 | macromolecule modification | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | HCCA |
| MF | GO:0140110 | transcription regulator activity | IEP | HCCA |
| BP | GO:1901264 | carbohydrate derivative transport | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| MF | GO:1901505 | carbohydrate derivative transmembrane transporter activity | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| BP | GO:1901642 | nucleoside transmembrane transport | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |