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  5. GSVIVT01008807001

GSVIVT01008807001 (PTAC6)


Aliases : PTAC6

Description : RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essentiell co-factors.PAP8/TAC6 component


Gene families : OG0007877 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007877_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01008807001
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AT1G21600 PTAC6 plastid transcriptionally active 6 0.05 OrthoFinder output from all 47 species
Azfi_s0005.g008949 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.03 OrthoFinder output from all 47 species
Cba_g25899 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.03 OrthoFinder output from all 47 species
Ceric.38G052000.1 PTAC6, Ceric.38G052000 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.1 OrthoFinder output from all 47 species
Dcu_g39158 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.02 OrthoFinder output from all 47 species
Ehy_g14377 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.03 OrthoFinder output from all 47 species
LOC_Os11g01890.1 PTAC6, LOC_Os11g01890 PAP8/TAC6 cofactor of plastid-encoded RNA polymerase 0.07 OrthoFinder output from all 47 species
LOC_Os12g01950.1 PTAC6, LOC_Os12g01950 PAP8/TAC6 cofactor of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species
Mp8g10030.1 PTAC6 PAP8/TAC6 cofactor of plastid-encoded RNA polymerase 0.11 OrthoFinder output from all 47 species
Nbi_g00889 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.04 OrthoFinder output from all 47 species
Ore_g40614 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.03 OrthoFinder output from all 47 species
Pir_g17712 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007748 PTAC6 cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)... 0.06 OrthoFinder output from all 47 species
Solyc04g057870.3.1 PTAC6, Solyc04g057870 PAP8/TAC6 cofactor of plastid-encoded RNA polymerase 0.16 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004418 hydroxymethylbilane synthase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004784 superoxide dismutase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!