1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01007563001

GSVIVT01007563001


Description : RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor


Gene families : OG0000297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000297_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01007563001

Target Alias Description ECC score Gene Family Method Actions
Als_g34158 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0503.g073924 ZFN1 regulatory protein of RNA homeostasis & original... 0.05 OrthoFinder output from all 47 species
Ore_g44844 ZFN1 regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Pnu_g13327 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Pp3c26_12270V3.1 ZFN1, Pp3c26_12270 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.03 OrthoFinder output from all 47 species
Zm00001e017266_P001 Zm00001e017266 C3H zinc finger transcription factor 0.06 OrthoFinder output from all 47 species
Zm00001e025563_P001 Zm00001e025563 C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Zm00001e025565_P002 Zm00001e025565 C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Zm00001e039538_P001 Zm00001e039538 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
CC GO:0005956 protein kinase CK2 complex IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1902554 serine/threonine protein kinase complex IEP HCCA
CC GO:1902911 protein kinase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 414 437
IPR000571 Znf_CCCH 227 250
IPR000571 Znf_CCCH 133 155
IPR000571 Znf_CCCH 180 203
IPR000571 Znf_CCCH 367 392
No external refs found!