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  5. GSVIVT01006669001

GSVIVT01006669001


Description : Protein biosynthesis.organelle translation machineries.mitochondrial ribosome.small subunit proteome.mtRPS4 component


Gene families : OG0012524 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0012524_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01006669001
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AT2G07734 No alias Alpha-L RNA-binding motif/Ribosomal protein S4 family protein 0.04 OrthoFinder output from all 47 species
ATMG00290 RPS4 mitochondrial ribosomal protein S4 0.03 OrthoFinder output from all 47 species
Gb_22592 No alias component mtRPS4 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
MA_10101694g0010 No alias component mtRPS4 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Solyc00g021640.2.1 Solyc00g021640 component mtRPS4 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Zm00001e042281_P001 Zm00001e042281 Ribosomal protein S4, mitochondrial OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e042282_P001 Zm00001e042282 component mtRPS4 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Zm00001e042286_P001 Zm00001e042286 Ribosomal protein S4, mitochondrial OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e042287_P001 Zm00001e042287 component mtRPS4 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Zm00001e042320_P001 Zm00001e042320 component mtRPS4 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Zm00001e042321_P001 Zm00001e042321 Ribosomal protein S4, mitochondrial OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e042501_P001 Zm00001e042501 Ribosomal protein S4, mitochondrial OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 108 152
No external refs found!