1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01003731001

GSVIVT01003731001 (SVL5)


Aliases : SVL5

Description : Glycerophosphodiester phosphodiesterase GDPDL6 OS=Arabidopsis thaliana


Gene families : OG0002387 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002387_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01003731001
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00252p00015420 SVL4,... Glycerophosphodiester phosphodiesterase GDPDL6... 0.17 OrthoFinder output from all 47 species
AT3G20520 SVL3 SHV3-like 3 0.03 OrthoFinder output from all 47 species
AT4G26690 GPDL2, SHV3, MRH5 PLC-like phosphodiesterase family protein 0.06 OrthoFinder output from all 47 species
AT5G58050 SVL4 SHV3-like 4 0.1 OrthoFinder output from all 47 species
AT5G58170 SVL5 SHV3-like 5 0.08 OrthoFinder output from all 47 species
Als_g14503 SVL5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08832 SVL4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0064.g035674 SVL5 not classified & original description: CDS=1-2358 0.03 OrthoFinder output from all 47 species
Ceric.08G056600.1 SVL5, Ceric.08G056600 not classified & original description: pacid=50637619... 0.05 OrthoFinder output from all 47 species
Dac_g16413 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g15330 GPDL2, SHV3, MRH5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_10598 SVL1 Glycerophosphodiester phosphodiesterase GDPDL4... 0.03 OrthoFinder output from all 47 species
Gb_18319 SVL1 Glycerophosphodiester phosphodiesterase GDPDL4... 0.02 OrthoFinder output from all 47 species
LOC_Os02g09450.1 SVL5, LOC_Os02g09450 Glycerophosphodiester phosphodiesterase GDPDL7... 0.13 OrthoFinder output from all 47 species
LOC_Os04g39610.1 GPDL2, SHV3,... Glycerophosphodiester phosphodiesterase GDPDL4... 0.03 OrthoFinder output from all 47 species
Lfl_g02261 SVL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g24535 SVL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10434415g0020 SNC4 Protein SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4... 0.04 OrthoFinder output from all 47 species
MA_10435620g0010 SVL1 Protein SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4... 0.03 OrthoFinder output from all 47 species
Mp8g07940.1 SVL5 Glycerophosphodiester phosphodiesterase GDPDL7... 0.02 OrthoFinder output from all 47 species
Msp_g26126 SVL5 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g05893 SVL5 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0122.g021443 SVL5 not classified & original description: CDS=22-1383 0.03 OrthoFinder output from all 47 species
Sam_g17680 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g014490.4.1 SVL4, Solyc02g014490 Glycerophosphodiester phosphodiesterase GDPDL7... 0.15 OrthoFinder output from all 47 species
Solyc02g014530.4.1 SVL4, Solyc02g014530 Glycerophosphodiester phosphodiesterase GDPDL6... 0.1 OrthoFinder output from all 47 species
Spa_g21490 SVL5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e025069_P001 SVL5, Zm00001e025069 Glycerophosphodiester phosphodiesterase GDPDL7... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEA Interproscan
MF GO:0008081 phosphoric diester hydrolase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
InterPro domains Description Start Stop
IPR030395 GP_PDE_dom 354 643
No external refs found!