1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01001186001

GSVIVT01001186001


Description : Pentatricopeptide repeat-containing protein At1g03100, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0001501 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001501_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01001186001
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00080p00039920 CRM3, HCF152,... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
Smo82002 CRM3, HCF152 RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0045735 nutrient reservoir activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
InterPro domains Description Start Stop
IPR006045 Cupin_1 383 539
IPR002885 Pentatricopeptide_repeat 1208 1253
IPR002885 Pentatricopeptide_repeat 902 928
IPR002885 Pentatricopeptide_repeat 1071 1096
IPR002885 Pentatricopeptide_repeat 1121 1166
No external refs found!