GSVIVT01000554001

Description : Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 OS=Arabidopsis thaliana

Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01000554001

Target	Alias	Description	ECC score	Gene Family Method
Adi_g107994	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g01861	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g14595	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g08449	No alias	RNA helicase *(Prp22) & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os06g23530.1	LOC_Os06g23530	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	OrthoFinder output from all 47 species
Lfl_g03223	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g09133	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005215	transporter activity	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	973	1102
IPR011709	DEAD-box_helicase_OB_fold	1327	1403
IPR007502	Helicase-assoc_dom	1165	1289
IPR002241	Glyco_hydro_27	207	381

External Links

No external refs found!