GSVIVT01000253001

Description : Chromatin organisation.histone modifications.histone deacetylation.histone deacetylase machineries.HDC1/Rxt3 associated component

Gene families : OG0004198 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004198_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01000253001

Target	Alias	Description	ECC score	Gene Family Method
Adi_g011656	No alias	associated component *(HDC1) of histone deacetylase...	0.05	OrthoFinder output from all 47 species
Aev_g05483	No alias	associated component *(HDC1) of histone deacetylase...	0.03	OrthoFinder output from all 47 species
Aob_g03580	No alias	associated component *(HDC1) of histone deacetylase...	0.04	OrthoFinder output from all 47 species
Dcu_g03126	No alias	associated component *(HDC1) of histone deacetylase...	0.04	OrthoFinder output from all 47 species
Gb_35031	No alias	associated component HDC1/Rxt3 of histone deacetylase machineries	0.03	OrthoFinder output from all 47 species
LOC_Os07g29450.1	LOC_Os07g29450	no hits & (original description: none)	0.07	OrthoFinder output from all 47 species
Lfl_g10369	No alias	associated component *(HDC1) of histone deacetylase...	0.06	OrthoFinder output from all 47 species
Mp3g12140.1	No alias	associated component HDC1/Rxt3 of histone deacetylase machineries	0.04	OrthoFinder output from all 47 species
Msp_g25492	No alias	associated component *(HDC1) of histone deacetylase...	0.03	OrthoFinder output from all 47 species
Nbi_g03166	No alias	associated component *(HDC1) of histone deacetylase...	0.03	OrthoFinder output from all 47 species
Ore_g06630	No alias	associated component *(HDC1) of histone deacetylase...	0.02	OrthoFinder output from all 47 species
Ppi_g03202	No alias	associated component *(HDC1) of histone deacetylase...	0.06	OrthoFinder output from all 47 species
Sam_g36521	No alias	associated component *(HDC1) of histone deacetylase...	0.02	OrthoFinder output from all 47 species
Solyc05g056340.3.1	Solyc05g056340	associated component HDC1/Rxt3 of histone deacetylase machineries	0.07	OrthoFinder output from all 47 species
Tin_g13819	No alias	associated component *(HDC1) of histone deacetylase...	0.03	OrthoFinder output from all 47 species
Zm00001e010714_P003	Zm00001e010714	associated component HDC1/Rxt3 of histone deacetylase machineries	0.04	OrthoFinder output from all 47 species
Zm00001e022328_P001	Zm00001e022328	associated component HDC1/Rxt3 of histone deacetylase machineries	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006476	protein deacetylation	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016575	histone deacetylation	IEA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0035601	protein deacylation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0098732	macromolecule deacylation	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006479	protein methylation	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	HCCA
MF	GO:0008170	N-methyltransferase activity	IEP	HCCA
BP	GO:0008213	protein alkylation	IEP	HCCA
MF	GO:0008276	protein methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
MF	GO:0016278	lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	HCCA
BP	GO:0016571	histone methylation	IEP	HCCA
BP	GO:0018022	peptidyl-lysine methylation	IEP	HCCA
MF	GO:0018024	histone lysine N-methyltransferase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
CC	GO:0030173	obsolete integral component of Golgi membrane	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0034968	histone lysine methylation	IEP	HCCA
MF	GO:0042054	histone methyltransferase activity	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013951	Rxt3	181	224

External Links

No external refs found!

GSVIVT01000253001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation