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  5. GSVIVT01000171001

GSVIVT01000171001


Description : FRIGIDA-like protein 3 OS=Arabidopsis thaliana


Gene families : OG0000898 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000898_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01000171001
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00134410 evm_27.TU.AmTr_v1... FRIGIDA-like protein 3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Adi_g010824 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g014978 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g020466 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g059257 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g19277 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06358 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g13939 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os07g40270.1 LOC_Os07g40270 FRIGIDA-like protein 3 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
LOC_Os09g07380.1 LOC_Os09g07380 FRIGIDA-like protein 3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Len_g02882 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10436820g0010 No alias FRIGIDA-like protein 3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_105292g0010 No alias FRIGIDA-like protein 3 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Ore_g06621 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10001 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25145 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25233 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g33978 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12034 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g19358 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
InterPro domains Description Start Stop
IPR012474 Frigida 1 281
No external refs found!