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  5. GSVIVT01000107001

GSVIVT01000107001 (SHR, SGR7)


Aliases : SHR, SGR7

Description : External stimuli response.gravity.sensing and signalling.SHR transcription factor


Gene families : OG0003562 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003562_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01000107001
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00182770 SHR, SGR7,... External stimuli response.gravity.sensing and... 0.03 OrthoFinder output from all 47 species
AMTR_s00086p00066190 SHR, SGR7,... External stimuli response.gravity.sensing and... 0.04 OrthoFinder output from all 47 species
AT4G37650 SHR, SGR7 GRAS family transcription factor 0.04 OrthoFinder output from all 47 species
Aob_g17904 SHR, SGR7 gravity signalling transcription factor *(SHR) &... 0.02 OrthoFinder output from all 47 species
Cba_g08221 SHR, SGR7 gravity signalling transcription factor *(SHR) &... 0.02 OrthoFinder output from all 47 species
Ceric.38G001000.1 SHR, SGR7,... gravity signalling transcription factor *(SHR) &... 0.04 OrthoFinder output from all 47 species
LOC_Os07g39820.1 SHR, SGR7, LOC_Os07g39820 transcription factor (GRAS). SHR gravity signalling... 0.05 OrthoFinder output from all 47 species
Solyc02g092370.1.1 SHR, SGR7, Solyc02g092370 transcription factor (GRAS). SHR gravity signalling... 0.03 OrthoFinder output from all 47 species
Zm00001e002085_P001 SHR, SGR7, Zm00001e002085 transcription factor (GRAS). SHR gravity signalling... 0.08 OrthoFinder output from all 47 species
Zm00001e010666_P001 SHR, SGR7, Zm00001e010666 transcription factor (GRAS). SHR gravity signalling... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 63 247
No external refs found!