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  5. Solyc12g100000.3.1

Solyc12g100000.3.1 (Solyc12g100000)


Aliases : Solyc12g100000

Description : U-box domain-containing protein 4 OS=Arabidopsis thaliana (sp|o22193|pub4_arath : 768.0)


Gene families : OG0001662 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001662_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g100000.3.1

Target Alias Description ECC score Gene Family Method Actions
AT5G67340 No alias ARM repeat superfamily protein 0.03 OrthoFinder output from all 47 species
Aop_g06628 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene57982.t1 Aspi01Gene57982 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0288.g063259 No alias E3 ubiquitin ligase & original description: CDS=563-3001 0.03 OrthoFinder output from all 47 species
Cba_g67832 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.27G022700.1 Ceric.27G022700 E3 ubiquitin ligase & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g09075 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06457 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g01582 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g24860 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01000169001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
Gb_38670 No alias U-box domain-containing protein 4 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Ore_g08665 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g10761 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g06679 No alias E3 ubiquiTin ligase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 236 306
IPR000225 Armadillo 649 686
IPR000225 Armadillo 567 604
No external refs found!