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  5. Solyc12g099740.2.1

Solyc12g099740.2.1 (Solyc12g099740)


Aliases : Solyc12g099740

Description : PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana (sp|q947d2|praf1_arath : 852.0)


Gene families : OG0000592 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000592_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g099740.2.1

Target Alias Description ECC score Gene Family Method Actions
AT1G65920 No alias Regulator of chromosome condensation (RCC1) family with... 0.04 OrthoFinder output from all 47 species
Ceric.09G040000.1 Ceric.09G040000 not classified & original description: pacid=50586756... 0.02 OrthoFinder output from all 47 species
GSVIVT01013496001 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.07 OrthoFinder output from all 47 species
LOC_Os01g72320.1 LOC_Os01g72320 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
LOC_Os01g73410.1 PRAF1, LOC_Os01g73410 PH, RCC1 and FYVE domains-containing protein 1... 0.06 OrthoFinder output from all 47 species
LOC_Os05g31920.2 LOC_Os05g31920 PH, RCC1 and FYVE domains-containing protein 1... 0.05 OrthoFinder output from all 47 species
Msp_g09378 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g07009 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo112120 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.02 OrthoFinder output from all 47 species
Smo180358 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Zm00001e007456_P003 PRAF1, Zm00001e007456 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Zm00001e015467_P001 Zm00001e015467 PH, RCC1 and FYVE domains-containing protein 1... 0.07 OrthoFinder output from all 47 species
Zm00001e023246_P001 Zm00001e023246 PH, RCC1 and FYVE domains-containing protein 1... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001849 PH_domain 23 129
IPR013591 Brevis_radix_dom 1033 1088
IPR027988 BRX_N 917 951
IPR000408 Reg_chr_condens 605 652
IPR000408 Reg_chr_condens 551 600
IPR000408 Reg_chr_condens 436 484
IPR000408 Reg_chr_condens 499 548
IPR000408 Reg_chr_condens 331 379
IPR000408 Reg_chr_condens 382 432
IPR000306 Znf_FYVE 656 722
No external refs found!