Solyc12g098700.1.1 (Solyc12g098700)


Aliases : Solyc12g098700

Description : RNA helicase (Prp5)


Gene families : OG0003781 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003781_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g098700.1.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00136p00027550 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder output from all 47 species
AT1G20920 No alias P-loop containing nucleoside triphosphate hydrolases... 0.09 OrthoFinder output from all 47 species
AT3G09620 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 OrthoFinder output from all 47 species
Ala_g15868 No alias RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g28448 No alias RNA helicase *(RCF1) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0051.g031460 No alias RNA helicase *(RCF1) & original description: CDS=143-4114 0.02 OrthoFinder output from all 47 species
Ceric.37G065700.1 Ceric.37G065700 RNA helicase *(RCF1) & original description:... 0.09 OrthoFinder output from all 47 species
Cre16.g676400 No alias RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder output from all 47 species
GSVIVT01023849001 No alias DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana 0.1 OrthoFinder output from all 47 species
Gb_03798 No alias RNA helicase (Prp5) 0.05 OrthoFinder output from all 47 species
Lfl_g16955 No alias RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
MA_175476g0010 No alias RNA helicase (Prp5) 0.03 OrthoFinder output from all 47 species
Mp1g06750.1 No alias RNA helicase (Prp5) 0.12 OrthoFinder output from all 47 species
Ore_g10272 No alias RNA helicase *(RCF1) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g52675 No alias RNA helicase *(RCF1) & original description: none 0.02 OrthoFinder output from all 47 species
Smo6590 No alias DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Zm00001e040204_P001 Zm00001e040204 RNA helicase (Prp5) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 734 843
IPR011545 DEAD/DEAH_box_helicase_dom 526 697
No external refs found!