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  5. Solyc12g096170.2.1

Solyc12g096170.2.1 (EMB3006, Solyc12g096170)


Aliases : EMB3006, Solyc12g096170

Description : no hits & (original description: none)


Gene families : OG0007866 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007866_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g096170.2.1
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
Ceric.04G012600.1 Ceric.04G012600 component *(NNF1) of kinetochore KNL1-Mis12-Ndc80... 0.05 OrthoFinder output from all 47 species
Dcu_g12636 No alias component *(NNF1) of kinetochore KNL1-Mis12-Ndc80... 0.1 OrthoFinder output from all 47 species
Gb_05431 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Nbi_g10041 No alias component *(NNF1) of kinetochore KNL1-Mis12-Ndc80... 0.06 OrthoFinder output from all 47 species
Sam_g19038 No alias component *(NNF1) of kinetochore KNL1-Mis12-Ndc80... 0.04 OrthoFinder output from all 47 species
Tin_g44292 No alias component *(NNF1) of kinetochore KNL1-Mis12-Ndc80... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007064 mitotic sister chromatid cohesion IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0031390 Ctf18 RFC-like complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR007128 PMF1/Nnf1 51 145
No external refs found!