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  5. Solyc12g095960.3.1

Solyc12g095960.3.1 (Solyc12g095960)


Aliases : Solyc12g095960

Description : no hits & (original description: none)


Gene families : OG0001047 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001047_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g095960.3.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00235910 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AMTR_s00099p00056810 evm_27.TU.AmTr_v1... No description available 0.07 OrthoFinder output from all 47 species
AMTR_s00169p00047130 evm_27.TU.AmTr_v1... No description available 0.06 OrthoFinder output from all 47 species
AT1G33680 No alias KH domain-containing protein 0.05 OrthoFinder output from all 47 species
AT2G25970 No alias KH domain-containing protein 0.04 OrthoFinder output from all 47 species
Adi_g014211 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g077319 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g12253 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g20615 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g33204 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g29246 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g11832 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g02902 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g12066 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0004.g008730 No alias not classified & original description: CDS=100-2877 0.03 OrthoFinder output from all 47 species
Cba_g72516 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g72682 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g78248 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.03G027700.1 Ceric.03G027700 not classified & original description: pacid=50573278... 0.03 OrthoFinder output from all 47 species
Ceric.20G036400.1 Ceric.20G036400 not classified & original description: pacid=50567078... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.157 No alias Protein BTR1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre06.g250800 No alias No description available 0.08 OrthoFinder output from all 47 species
Dcu_g11741 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g10230 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03956 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g06078 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g23014 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_31122 No alias Protein BTR1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os02g13130.1 LOC_Os02g13130 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os08g01930.1 LOC_Os08g01930 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Len_g24459 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g10191 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10434164g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g17013 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g17404 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g26146 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g35075 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g35076 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g38566 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g18992 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g19200 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g19749 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g10281 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g15729 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g52260 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g07318 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g39488 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e014452_P001 Zm00001e014452 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Zm00001e021868_P005 Zm00001e021868 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Zm00001e024927_P001 Zm00001e024927 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Zm00001e029163_P001 Zm00001e029163 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 123 189
IPR004088 KH_dom_type_1 217 283
No external refs found!