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  5. Solyc12g088850.1.1

Solyc12g088850.1.1 (Solyc12g088850)


Aliases : Solyc12g088850

Description : no hits & (original description: none)


Gene families : OG0011039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0011039_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g088850.1.1
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00126p00122920 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
LOC_Os06g11030.1 MSS3, LOC_Os06g11030 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc12g088860.2.1 Solyc12g088860 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e030807_P001 Zm00001e030807 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004143 diacylglycerol kinase activity IEP HCCA
MF GO:0004866 endopeptidase inhibitor activity IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0030414 peptidase inhibitor activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP HCCA
MF GO:0061134 peptidase regulator activity IEP HCCA
MF GO:0061135 endopeptidase regulator activity IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 68 85
IPR002048 EF_hand_dom 23 50
No external refs found!