1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc12g088530.2.1

Solyc12g088530.2.1 (CYCA3;1, Solyc12g088530)


Aliases : CYCA3;1, Solyc12g088530

Description : cyclin (CYCA)


Gene families : OG0001097 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001097_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g088530.2.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272790 CYCA3;1,... Cell cycle.regulation.cyclins.CYCA-type cyclin 0.03 OrthoFinder output from all 47 species
AMTR_s00068p00198800 CYCA1;1 Cell cycle.regulation.cyclins.CYCA-type cyclin 0.03 OrthoFinder output from all 47 species
AT1G47220 CYCA3;3 Cyclin A3;3 0.03 OrthoFinder output from all 47 species
Adi_g023459 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.03 OrthoFinder output from all 47 species
Aev_g16144 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
Ala_g21059 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
Ala_g23638 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
Ala_g25625 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.03 OrthoFinder output from all 47 species
Aop_g01772 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
Aop_g19060 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
Ceric.08G046900.1 CYCA1;1, Ceric.08G046900 regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
Ceric.30G011000.1 CYCA1;1, Ceric.30G011000 regulatory protein *(TAM) involved in metaphase to... 0.03 OrthoFinder output from all 47 species
Dde_g11191 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
Dde_g14127 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
Ehy_g22941 CYC3B, CYCA2;2, CYC2BAT regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
LOC_Os01g13229.1 CYCA1;1, LOC_Os01g13229 cyclin (CYCA) 0.03 OrthoFinder output from all 47 species
Len_g01814 CYCA1;1 regulatory protein *(CYCA) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Lfl_g27435 CYCA1;1 regulatory protein *(CYCA) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Msp_g10135 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.04 OrthoFinder output from all 47 species
Msp_g12560 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.03 OrthoFinder output from all 47 species
Msp_g31552 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.03 OrthoFinder output from all 47 species
Nbi_g06697 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.03 OrthoFinder output from all 47 species
Nbi_g24493 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.03 OrthoFinder output from all 47 species
Ore_g35611 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.03 OrthoFinder output from all 47 species
Ppi_g05200 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.03 OrthoFinder output from all 47 species
Ppi_g31211 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.03 OrthoFinder output from all 47 species
Spa_g11240 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.03 OrthoFinder output from all 47 species
Spa_g11241 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.03 OrthoFinder output from all 47 species
Spa_g30899 CYCA1;1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g03369 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.04 OrthoFinder output from all 47 species
Tin_g05574 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.05 OrthoFinder output from all 47 species
Tin_g30126 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.05 OrthoFinder output from all 47 species
Zm00001e003049_P002 CYCA3;1, Zm00001e003049 cyclin (CYCA) 0.02 OrthoFinder output from all 47 species
Zm00001e017993_P001 CYCA3;1, Zm00001e017993 cyclin (CYCA) 0.03 OrthoFinder output from all 47 species
Zm00001e026125_P002 CYCA1;1, Zm00001e026125 cyclin (CYCA) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0042025 host cell nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
MF GO:0002161 aminoacyl-tRNA editing activity IEP HCCA
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP HCCA
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
MF GO:0016229 steroid dehydrogenase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
CC GO:0070652 HAUS complex IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
InterPro domains Description Start Stop
IPR006671 Cyclin_N 88 216
IPR004367 Cyclin_C-dom 219 341
No external refs found!