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  5. Solyc12g056340.2.1

Solyc12g056340.2.1 (Solyc12g056340)


Aliases : Solyc12g056340

Description : Probable DEAD-box ATP-dependent RNA helicase 48 OS=Arabidopsis thaliana (sp|q9c8s9|rh48_arath : 691.0)


Gene families : OG0001618 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001618_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g056340.2.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00107p00082420 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G63250 No alias DEA(D/H)-box RNA helicase family protein 0.13 OrthoFinder output from all 47 species
AT5G08620 ATRH25, STRS2 DEA(D/H)-box RNA helicase family protein 0.06 OrthoFinder output from all 47 species
Azfi_s0009.g011827 No alias mRNA helicase *(RH31) & original description: CDS=535-2991 0.05 OrthoFinder output from all 47 species
Azfi_s0205.g057731 No alias mRNA helicase *(RH31) & original description: CDS=150-1823 0.05 OrthoFinder output from all 47 species
Cba_g25132 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.27G031600.1 Ceric.27G031600 mRNA helicase *(RH31) & original description:... 0.03 OrthoFinder output from all 47 species
GSVIVT01019804001 No alias DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa... 0.12 OrthoFinder output from all 47 species
GSVIVT01027084001 No alias DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_09254 No alias DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os06g33520.1 LOC_Os06g33520 DEAD-box ATP-dependent RNA helicase 31 OS=Oryza sativa... 0.07 OrthoFinder output from all 47 species
Len_g51004 ATRH25, STRS2 mRNA helicase *(RH31) & original description: none 0.03 OrthoFinder output from all 47 species
Mp7g07740.1 No alias Probable DEAD-box ATP-dependent RNA helicase 48... 0.06 OrthoFinder output from all 47 species
Ore_g30282 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g12179 No alias mRNA helicase *(RH31) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12986 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e016261_P001 Zm00001e016261 DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa... 0.06 OrthoFinder output from all 47 species
Zm00001e020446_P003 Zm00001e020446 DEAD-box ATP-dependent RNA helicase 26 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Zm00001e037076_P003 Zm00001e037076 DEAD-box ATP-dependent RNA helicase 31 OS=Oryza sativa... 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 583 688
IPR011545 DEAD/DEAH_box_helicase_dom 361 539
No external refs found!