Solyc12g042990.3.1 (Solyc12g042990)


Aliases : Solyc12g042990

Description : component CASC3 of RNA quality control Exon Junction complex


Gene families : OG0002816 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002816_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g042990.3.1

Target Alias Description ECC score Gene Family Method Actions
AT1G15280 No alias CASC3/Barentsz eIF4AIII binding 0.07 OrthoFinder output from all 47 species
Adi_g004430 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g074719 No alias component *(CASC3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Als_g57002 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Aob_g14440 No alias component *(CASC3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Aop_g13512 No alias component *(CASC3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
GSVIVT01017130001 No alias RNA processing.RNA quality control Exon Junction complex... 0.03 OrthoFinder output from all 47 species
LOC_Os01g41190.2 LOC_Os01g41190 component CASC3 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Lfl_g07367 No alias component *(CASC3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Mp8g03760.1 No alias component CASC3 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Msp_g16058 No alias component *(CASC3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Pir_g66513 No alias component *(CASC3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Ppi_g32199 No alias component *(CASC3) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Sam_g27144 No alias component *(CASC3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Spa_g54006 No alias component *(CASC3) of RNA quality control Exon Junction... 0.06 OrthoFinder output from all 47 species
Tin_g04726 No alias component *(CASC3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Zm00001e027824_P002 Zm00001e027824 component CASC3 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR018545 Btz_dom 139 228
No external refs found!