Aliases : Solyc12g042990
Description : component CASC3 of RNA quality control Exon Junction complex
Gene families : OG0002816 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002816_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G15280 | No alias | CASC3/Barentsz eIF4AIII binding | 0.07 | OrthoFinder output from all 47 species | |
Adi_g004430 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Adi_g074719 | No alias | component *(CASC3) of RNA quality control Exon Junction... | 0.04 | OrthoFinder output from all 47 species | |
Als_g57002 | No alias | component *(CASC3) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
Aob_g14440 | No alias | component *(CASC3) of RNA quality control Exon Junction... | 0.04 | OrthoFinder output from all 47 species | |
Aop_g13512 | No alias | component *(CASC3) of RNA quality control Exon Junction... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01017130001 | No alias | RNA processing.RNA quality control Exon Junction complex... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os01g41190.2 | LOC_Os01g41190 | component CASC3 of RNA quality control Exon Junction complex | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g07367 | No alias | component *(CASC3) of RNA quality control Exon Junction... | 0.04 | OrthoFinder output from all 47 species | |
Mp8g03760.1 | No alias | component CASC3 of RNA quality control Exon Junction complex | 0.03 | OrthoFinder output from all 47 species | |
Msp_g16058 | No alias | component *(CASC3) of RNA quality control Exon Junction... | 0.02 | OrthoFinder output from all 47 species | |
Pir_g66513 | No alias | component *(CASC3) of RNA quality control Exon Junction... | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g32199 | No alias | component *(CASC3) of RNA quality control Exon Junction... | 0.05 | OrthoFinder output from all 47 species | |
Sam_g27144 | No alias | component *(CASC3) of RNA quality control Exon Junction... | 0.04 | OrthoFinder output from all 47 species | |
Spa_g54006 | No alias | component *(CASC3) of RNA quality control Exon Junction... | 0.06 | OrthoFinder output from all 47 species | |
Tin_g04726 | No alias | component *(CASC3) of RNA quality control Exon Junction... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e027824_P002 | Zm00001e027824 | component CASC3 of RNA quality control Exon Junction complex | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
BP | GO:0006476 | protein deacetylation | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
BP | GO:0016570 | histone modification | IEP | HCCA |
BP | GO:0016575 | histone deacetylation | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0035601 | protein deacylation | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
BP | GO:0098732 | macromolecule deacylation | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR018545 | Btz_dom | 139 | 228 |
No external refs found! |