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  5. Solyc12g042520.3.1

Solyc12g042520.3.1 (Solyc12g042520)


Aliases : Solyc12g042520

Description : GASA precursor polypeptide


Gene families : OG0000541 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000541_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g042520.3.1
Cluster HCCA: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00273070 evm_27.TU.AmTr_v1... Phytohormones.signalling peptides.CRP... 0.03 OrthoFinder output from all 47 species
AMTR_s00052p00079580 evm_27.TU.AmTr_v1... Phytohormones.signalling peptides.CRP... 0.03 OrthoFinder output from all 47 species
AMTR_s00053p00132370 evm_27.TU.AmTr_v1... Phytohormones.signalling peptides.CRP... 0.03 OrthoFinder output from all 47 species
AMTR_s00060p00095260 evm_27.TU.AmTr_v1... Phytohormones.signalling peptides.CRP... 0.03 OrthoFinder output from all 47 species
AMTR_s00090p00169760 evm_27.TU.AmTr_v1... Phytohormones.signalling peptides.CRP... 0.02 OrthoFinder output from all 47 species
AT1G22690 No alias Gibberellin-regulated family protein 0.04 OrthoFinder output from all 47 species
AT2G14900 No alias Gibberellin-regulated family protein 0.03 OrthoFinder output from all 47 species
AT2G18420 No alias Gibberellin-regulated family protein 0.03 OrthoFinder output from all 47 species
AT4G09600 GASA3 GAST1 protein homolog 3 0.03 OrthoFinder output from all 47 species
AT4G09610 GASA2 GAST1 protein homolog 2 0.03 OrthoFinder output from all 47 species
AT5G15230 GASA4 GAST1 protein homolog 4 0.04 OrthoFinder output from all 47 species
AT5G59845 No alias Gibberellin-regulated family protein 0.03 OrthoFinder output from all 47 species
Aev_g00312 No alias GASA precursor polypeptide & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g34519 GASA1 GASA precursor polypeptide & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g30733 No alias GASA precursor polypeptide & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g38420 No alias GASA precursor polypeptide & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene12349.t1 Aspi01Gene12349 GASA precursor polypeptide & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0030.g024387 No alias GASA precursor polypeptide & original description: CDS=233-526 0.03 OrthoFinder output from all 47 species
Azfi_s0066.g036114 No alias GASA precursor polypeptide & original description: CDS=221-619 0.04 OrthoFinder output from all 47 species
Ceric.13G031500.1 Ceric.13G031500 GASA precursor polypeptide & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g21845 No alias GASA precursor polypeptide & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g27039 No alias GASA precursor polypeptide & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g02048 No alias GASA precursor polypeptide & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g22315 No alias GASA precursor polypeptide & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000168001 No alias Phytohormones.signalling peptides.CRP... 0.06 OrthoFinder output from all 47 species
GSVIVT01003388001 No alias Phytohormones.signalling peptides.CRP... 0.04 OrthoFinder output from all 47 species
Gb_04075 No alias GASA precursor polypeptide 0.05 OrthoFinder output from all 47 species
Gb_12909 No alias GASA precursor polypeptide 0.04 OrthoFinder output from all 47 species
Gb_16670 No alias GASA precursor polypeptide 0.01 OrthoFinder output from all 47 species
Gb_33214 No alias GASA precursor polypeptide 0.02 OrthoFinder output from all 47 species
Gb_34465 No alias GASA precursor polypeptide 0.03 OrthoFinder output from all 47 species
Gb_41421 No alias GASA precursor polypeptide 0.02 OrthoFinder output from all 47 species
LOC_Os05g31280.1 LOC_Os05g31280 GASA precursor polypeptide 0.04 OrthoFinder output from all 47 species
Lfl_g28086 No alias GASA precursor polypeptide & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g40342 No alias GASA precursor polypeptide & original description: none 0.02 OrthoFinder output from all 47 species
MA_132217g0010 No alias GASA precursor polypeptide 0.04 OrthoFinder output from all 47 species
MA_190475g0010 No alias GASA precursor polypeptide 0.03 OrthoFinder output from all 47 species
MA_9071020g0010 GASA2 GASA precursor polypeptide 0.01 OrthoFinder output from all 47 species
Ore_g24203 No alias GASA precursor polypeptide & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g27903 No alias GASA precursor polypeptide & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61575 GASA3 GASA precursor polypeptide & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g31415 No alias GASA precursor polypeptide & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g069790.4.1 Solyc06g069790 GASA precursor polypeptide 0.03 OrthoFinder output from all 47 species
Solyc08g005620.3.1 Solyc08g005620 GASA precursor polypeptide 0.07 OrthoFinder output from all 47 species
Tin_g12034 GASA3 GASA precursor polypeptide & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
MF GO:0008146 sulfotransferase activity IEP HCCA
MF GO:0010333 terpene synthase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
MF GO:0020037 heme binding IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
CC GO:0048046 apoplast IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
InterPro domains Description Start Stop
IPR003854 GASA 29 88
No external refs found!