Solyc12g038510.2.1 (AGL4, SEP2, Solyc12g038510)

Aliases : AGL4, SEP2, Solyc12g038510

Description : transcription factor (MADS/AGL)

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc12g038510.2.1
Cluster	HCCA: Cluster_15

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00218870	ANR1, AGL44,...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
AMTR_s00013p00114420	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
AMTR_s00046p00208680	AGL16,...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
AMTR_s00047p00190220	AGL4, SEP2,...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
AMTR_s00089p00081270	PI,...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
AMTR_s00109p00015260	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
AMTR_s00109p00019490	AGL16,...	No description available	0.03	OrthoFinder output from all 47 species
AT2G42830	SHP2, AGL5	K-box region and MADS-box transcription factor family protein	0.06	OrthoFinder output from all 47 species
AT4G09960	STK, AGL11	K-box region and MADS-box transcription factor family protein	0.02	OrthoFinder output from all 47 species
AT4G11880	AGL14	AGAMOUS-like 14	0.04	OrthoFinder output from all 47 species
AT4G24540	AGL24	AGAMOUS-like 24	0.04	OrthoFinder output from all 47 species
AT5G23260	AGL32, TT16, ABS	K-box region and MADS-box transcription factor family protein	0.02	OrthoFinder output from all 47 species
AT5G51860	No alias	K-box region and MADS-box transcription factor family protein	0.04	OrthoFinder output from all 47 species
Adi_g001519	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g20861	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g14234	AGL3, SEP4	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g31838	AGL16	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g33319	AGL14	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g04197	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g37797	AGL16	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene15812.t2	AGL13, Aspi01Gene15812	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene17809.t1	AGL6, Aspi01Gene17809	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene17819.t1	SHP2, AGL5,...	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene17826.t1	SHP2, AGL5,...	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene44619.t1	SOC1, AGL20,...	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene54037.t3	Aspi01Gene54037	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0003.g007732	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ceric.07G094900.1	AGL7, AP1,...	MADS/AGL-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000944.9	AGL15	RNA biosynthesis.transcriptional activation.MADS box...	0.01	OrthoFinder output from all 47 species
Dac_g20775	AGL16	MADS/AGL-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Dac_g27669	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g19022	AGL13	MADS/AGL-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Dde_g38503	AGL42	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01006592001	AGL61, DIA	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
GSVIVT01008139001	AGL2, SEP1	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
GSVIVT01008560001	SOC1, AGL20, ATSOC1	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
GSVIVT01008806001	PI	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
GSVIVT01012110001	AGL32, TT16, ABS	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
GSVIVT01012250001	AGL7, AP1	RNA biosynthesis.transcriptional activation.MADS box...	0.06	OrthoFinder output from all 47 species
GSVIVT01014093001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
GSVIVT01018450001	AGL6	RNA biosynthesis.transcriptional activation.MADS box...	0.05	OrthoFinder output from all 47 species
GSVIVT01022182001	AGL104	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
GSVIVT01025945001	STK, AGL11	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
GSVIVT01026207001	AGL32, TT16, ABS	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
GSVIVT01027577001	AGL6	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
GSVIVT01033253001	AGL15	RNA biosynthesis.transcriptional activation.MADS box...	0.05	OrthoFinder output from all 47 species
GSVIVT01035477001	AGL30	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
Gb_03806	No alias	no hits & (original description: none)	0.07	OrthoFinder output from all 47 species
Gb_03807	AGL16	transcription factor (MADS/AGL)	0.06	OrthoFinder output from all 47 species
Gb_15398	PI	transcription factor (MADS/AGL)	0.06	OrthoFinder output from all 47 species
Gb_19897	AGL16	MADS-box transcription factor 27 OS=Oryza sativa subsp....	0.04	OrthoFinder output from all 47 species
Gb_41550	No alias	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
LOC_Os01g10504.1	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
LOC_Os02g01355.1	SOC1, AGL20,...	transcription factor (MADS/AGL)	0.05	OrthoFinder output from all 47 species
LOC_Os03g08754.1	SVP, AGL22,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
LOC_Os03g11614.1	AGL2, SEP1,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
LOC_Os03g54170.1	AGL2, SEP1,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
LOC_Os04g49150.1	AGL6, LOC_Os04g49150	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
LOC_Os05g11414.1	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.05	OrthoFinder output from all 47 species
LOC_Os06g22540.1	LOC_Os06g22540	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
LOC_Os06g23950.1	LOC_Os06g23950	transcription factor (MADS/AGL)	0.05	OrthoFinder output from all 47 species
LOC_Os09g32948.1	AGL9, SEP3,...	transcription factor (MADS/AGL)	0.06	OrthoFinder output from all 47 species
Len_g08514	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Len_g10100	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Len_g38722	AGL1, SHP1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g36451	AGL6	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
MA_10195631g0010	SOC1, AGL20, ATSOC1	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_2986g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_32676g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
MA_34737g0010	AGL17	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_5917g0010	AGL9, SEP3	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
MA_6544g0010	STK, AGL11	Floral homeotic protein AGAMOUS OS=Panax ginseng...	0.05	OrthoFinder output from all 47 species
MA_8636733g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
MA_8748850g0010	AGL24	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Nbi_g11231	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g20682	AGL16	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g56526	AGL21	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g60352	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000222	AGL33	MADS/AGL-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002217	AGL15	MADS/AGL-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0271.g027022	AGL7, AP1	MADS/AGL-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Sam_g36311	No alias	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Smo121275	AGL7, AP1	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
Solyc01g092950.3.1	SOC1, AGL20,...	MADS-box protein SOC1 OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
Solyc01g106710.1.1	AGL62, Solyc01g106710	component MED19 of head module of MEDIATOR transcription...	0.03	OrthoFinder output from all 47 species
Solyc03g114830.3.1	AGL8, FUL, Solyc03g114830	transcription factor (MADS/AGL)	0.05	OrthoFinder output from all 47 species
Solyc04g076280.4.1	AGL24, Solyc04g076280	MADS-box protein SVP OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
Solyc12g056460.3.1	SOC1, AGL20,...	transcription factor (MADS/AGL)	0.06	OrthoFinder output from all 47 species
Spa_g02544	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g17806	AGL10, CAL1, CAL	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e000846_P003	AGL4, SEP2,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e003667_P001	AGL9, SEP3,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Zm00001e005705_P004	AGL7, AP1, Zm00001e005705	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Zm00001e005708_P002	AGL2, SEP1,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Zm00001e006950_P001	AGL32, TT16,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Zm00001e010125_P001	AGL9, SEP3,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Zm00001e012026_P002	AGL7, AP1, Zm00001e012026	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e013738_P001	AGL32, TT16,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e015447_P001	AGL6, Zm00001e015447	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e016529_P004	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.07	OrthoFinder output from all 47 species
Zm00001e023236_P005	AGL6, Zm00001e023236	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Zm00001e027034_P001	PI, Zm00001e027034	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Zm00001e030373_P001	AGL10, CAL1,...	transcription factor (MADS/AGL)	0.05	OrthoFinder output from all 47 species
Zm00001e031267_P003	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.07	OrthoFinder output from all 47 species
Zm00001e033144_P001	AGL29, Zm00001e033144	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Zm00001e034629_P001	AGL9, SEP3,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Zm00001e038716_P004	AGL9, SEP3,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e039774_P001	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	87	171
IPR002100	TF_MADSbox	10	57

External Links

No external refs found!

Solyc12g038510.2.1 (AGL4, SEP2, Solyc12g038510)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation