Aliases : RPOA, Solyc12g035890
Description : DNA-directed RNA polymerase subunit alpha OS=Solanum tuberosum (sp|q2vee8|rpoa_soltu : 188.0)
Gene families : OG0006820 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006820_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Solyc12g035890.3.1 | |
Cluster | HCCA: Cluster_89 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Aev_g02093 | RPOA | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.07 | OrthoFinder output from all 47 species | |
Cba_g60899 | RPOA | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.05G041900.1 | RPOA, Ceric.05G041900 | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.05 | OrthoFinder output from all 47 species | |
Ceric.38G008600.1 | RPOA, Ceric.38G008600 | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.05 | OrthoFinder output from all 47 species | |
Gb_25929 | RPOA | DNA-directed RNA polymerase subunit alpha OS=Cycas... | 0.08 | OrthoFinder output from all 47 species | |
Gb_36750 | RPOA | RpoA core component plastid-encoded RNA polymerase | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os04g16842.1 | RPOA, LOC_Os04g16842 | RpoA core component plastid-encoded RNA polymerase | 0.06 | OrthoFinder output from all 47 species | |
LOC_Os06g39700.1 | RPOA, LOC_Os06g39700 | RpoA core component plastid-encoded RNA polymerase | 0.06 | OrthoFinder output from all 47 species | |
Pir_g12462 | RPOA | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.02 | OrthoFinder output from all 47 species | |
Sam_g01699 | No alias | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.03 | OrthoFinder output from all 47 species | |
Solyc00g500157.1.1 | RPOA, Solyc00g500157 | RpoA core component plastid-encoded RNA polymerase | 0.04 | OrthoFinder output from all 47 species | |
Solyc01g017440.1.1 | RPOA, Solyc01g017440 | DNA-directed RNA polymerase subunit alpha OS=Solanum... | 0.06 | OrthoFinder output from all 47 species | |
Spa_g18101 | RPOA | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.07 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEA | Interproscan |
BP | GO:0006351 | DNA-templated transcription | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0009521 | photosystem | IEP | HCCA |
CC | GO:0009522 | photosystem I | IEP | HCCA |
CC | GO:0009579 | thylakoid | IEP | HCCA |
BP | GO:0015979 | photosynthesis | IEP | HCCA |
CC | GO:0098796 | membrane protein complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR011260 | RNAP_asu_C | 175 | 217 |
No external refs found! |