1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc12g015860.2.1

Solyc12g015860.2.1 (FPS2, Solyc12g015860)


Aliases : FPS2, Solyc12g015860

Description : farnesyl diphosphate synthase


Gene families : OG0002996 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002996_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g015860.2.1
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
AT5G47770 FPS1 farnesyl diphosphate synthase 1 0.03 OrthoFinder output from all 47 species
Als_g48369 FPS2 EC_2.5 transferase transferring alkyl or aryl group,... 0.02 OrthoFinder output from all 47 species
Azfi_s0092.g042973 FPS2 EC_2.5 transferase transferring alkyl or aryl group,... 0.04 OrthoFinder output from all 47 species
Ceric.05G037300.1 FPS2, Ceric.05G037300 EC_2.5 transferase transferring alkyl or aryl group,... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000852.50 FPS1 Secondary metabolism.terpenoids.mevalonate... 0.02 OrthoFinder output from all 47 species
Dcu_g03783 FPS2 EC_2.5 transferase transferring alkyl or aryl group,... 0.03 OrthoFinder output from all 47 species
Gb_29809 FPS2 farnesyl diphosphate synthase 0.03 OrthoFinder output from all 47 species
LOC_Os04g56210.1 FPS2, LOC_Os04g56210 farnesyl diphosphate synthase 0.03 OrthoFinder output from all 47 species
LOC_Os05g46580.1 FPS1, LOC_Os05g46580 farnesyl diphosphate synthase 0.06 OrthoFinder output from all 47 species
MA_175884g0010 FPS1 farnesyl diphosphate synthase 0.04 OrthoFinder output from all 47 species
Mp3g22530.1 FPS1 farnesyl diphosphate synthase 0.04 OrthoFinder output from all 47 species
Msp_g04611 FPS2 EC_2.5 transferase transferring alkyl or aryl group,... 0.06 OrthoFinder output from all 47 species
Nbi_g00619 FPS2 EC_2.5 transferase transferring alkyl or aryl group,... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010063 FPS2 EC_2.5 transferase transferring alkyl or aryl group,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0008299 isoprenoid biosynthetic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR000092 Polyprenyl_synt 33 296
No external refs found!