Solyc12g014210.3.1 (Solyc12g014210)

Aliases : Solyc12g014210

Description : UBP1-associated protein 2C OS=Arabidopsis thaliana (sp|q9lka4|uba2c_arath : 299.0)

Gene families : OG0000537 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000537_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc12g014210.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00228130	UBA2A,...	UBP1-associated protein 2A OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AMTR_s00021p00110500	evm_27.TU.AmTr_v1...	UBP1-associated protein 2C OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
AMTR_s00101p00033020	UBA2A,...	UBP1-associated protein 2A OS=Arabidopsis thaliana	0.1	OrthoFinder output from all 47 species
Adi_g102699	UBA2A	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.03	OrthoFinder output from all 47 species
Aev_g31204	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.03	OrthoFinder output from all 47 species
Ala_g13079	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.03	OrthoFinder output from all 47 species
Ala_g21577	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.04	OrthoFinder output from all 47 species
Als_g07246	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.04	OrthoFinder output from all 47 species
Als_g15755	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.03	OrthoFinder output from all 47 species
Aob_g05082	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.04	OrthoFinder output from all 47 species
Aop_g07973	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.03	OrthoFinder output from all 47 species
Aop_g30808	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.04	OrthoFinder output from all 47 species
Azfi_s0021.g015653	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0441.g070336	UBA2A	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.02	OrthoFinder output from all 47 species
Cba_g07579	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.03	OrthoFinder output from all 47 species
Cba_g15611	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.03	OrthoFinder output from all 47 species
Ceric.08G042400.1	Ceric.08G042400	not classified & original description: pacid=50638759...	0.02	OrthoFinder output from all 47 species
Ceric.25G031800.1	Ceric.25G031800	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.02	OrthoFinder output from all 47 species
Ceric.28G013300.1	Ceric.28G013300	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.05	OrthoFinder output from all 47 species
Dac_g05700	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.03	OrthoFinder output from all 47 species
Dcu_g09486	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.03	OrthoFinder output from all 47 species
Dde_g00607	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.04	OrthoFinder output from all 47 species
Dde_g12484	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.02	OrthoFinder output from all 47 species
Ehy_g03502	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.03	OrthoFinder output from all 47 species
Ehy_g06784	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01037491001	UBA2A	UBP1-associated protein 2A OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Gb_04917	No alias	UBP1-associated protein 2C OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
LOC_Os01g42820.3	LOC_Os01g42820	UBP1-associated protein 2C OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Len_g09139	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.02	OrthoFinder output from all 47 species
Lfl_g10392	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.02	OrthoFinder output from all 47 species
MA_129986g0010	No alias	UBP1-associated protein 2B OS=Arabidopsis thaliana...	0.06	OrthoFinder output from all 47 species
MA_158497g0010	No alias	UBP1-associated protein 2C OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
MA_287080g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_3634858g0010	No alias	UBP1-associated protein 2C OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
MA_8212g0010	No alias	UBP1-associated protein 2C OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Mp4g08960.1	No alias	UBP1-associated protein 2C OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Msp_g07398	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.03	OrthoFinder output from all 47 species
Msp_g27006	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.03	OrthoFinder output from all 47 species
Msp_g27007	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.03	OrthoFinder output from all 47 species
Ore_g05902	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.04	OrthoFinder output from all 47 species
Ore_g07551	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.02	OrthoFinder output from all 47 species
Ore_g07696	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.03	OrthoFinder output from all 47 species
Ore_g09828	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.03	OrthoFinder output from all 47 species
Ore_g10985	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.03	OrthoFinder output from all 47 species
Ore_g10986	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.03	OrthoFinder output from all 47 species
Ore_g11269	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.02	OrthoFinder output from all 47 species
Ore_g20567	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.03	OrthoFinder output from all 47 species
Ore_g23311	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.03	OrthoFinder output from all 47 species
Ore_g43641	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.04	OrthoFinder output from all 47 species
Ore_g45365	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.03	OrthoFinder output from all 47 species
Pir_g13441	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.02	OrthoFinder output from all 47 species
Pir_g48132	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.02	OrthoFinder output from all 47 species
Pnu_g07372	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015184	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0147.g023148	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.02	OrthoFinder output from all 47 species
Sam_g27588	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.02	OrthoFinder output from all 47 species
Spa_g07595	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g30878	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.03	OrthoFinder output from all 47 species
Spa_g38080	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.03	OrthoFinder output from all 47 species
Tin_g05151	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.06	OrthoFinder output from all 47 species
Zm00001e017308_P004	UBA2A, Zm00001e017308	UBP1-associated protein 2A OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0031369	translation initiation factor binding	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	169	225
IPR000504	RRM_dom	72	138

External Links

No external refs found!

Solyc12g014210.3.1 (Solyc12g014210)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation