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  5. Solyc12g009440.2.1

Solyc12g009440.2.1 (Solyc12g009440)


Aliases : Solyc12g009440

Description : BSD2 assembly factor involved in RuBisCo assembly


Gene families : OG0007502 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007502_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g009440.2.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AT3G47650 No alias DnaJ/Hsp40 cysteine-rich domain superfamily protein 0.11 OrthoFinder output from all 47 species
Aev_g06316 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.02 OrthoFinder output from all 47 species
Ala_g06623 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.05 OrthoFinder output from all 47 species
Als_g00356 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.04 OrthoFinder output from all 47 species
Aop_g26060 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.04 OrthoFinder output from all 47 species
Azfi_s0168.g054582 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.09 OrthoFinder output from all 47 species
Cba_g54988 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.05 OrthoFinder output from all 47 species
Ceric.36G042600.1 Ceric.36G042600 assembly factor involved in RuBisCo assembly *(BSD2) &... 0.03 OrthoFinder output from all 47 species
Dac_g38789 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.02 OrthoFinder output from all 47 species
Dcu_g03433 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.07 OrthoFinder output from all 47 species
Dde_g14872 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01015532001 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.08 OrthoFinder output from all 47 species
GSVIVT01015534001 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
LOC_Os06g22690.1 LOC_Os06g22690 BSD2 assembly factor involved in RuBisCo assembly 0.09 OrthoFinder output from all 47 species
Lfl_g40205 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.07 OrthoFinder output from all 47 species
Msp_g11910 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.03 OrthoFinder output from all 47 species
Msp_g29361 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.04 OrthoFinder output from all 47 species
Nbi_g01616 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.05 OrthoFinder output from all 47 species
Ore_g07584 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.05 OrthoFinder output from all 47 species
Ore_g07585 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.05 OrthoFinder output from all 47 species
Pir_g60370 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.04 OrthoFinder output from all 47 species
Ppi_g57647 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0085.g018366 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.09 OrthoFinder output from all 47 species
Spa_g03931 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.02 OrthoFinder output from all 47 species
Tin_g09665 No alias assembly factor involved in RuBisCo assembly *(BSD2) &... 0.06 OrthoFinder output from all 47 species
Zm00001e003014_P001 Zm00001e003014 BSD2 assembly factor involved in RuBisCo assembly 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!