Solyc12g008390.3.1 (GC1, Solyc12g008390)

Aliases : GC1, Solyc12g008390

Description : golgin (GC1)

Gene families : OG0005613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005613_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc12g008390.3.1
Cluster	HCCA: Cluster_33

Target	Alias	Description	ECC score	Gene Family Method
AT2G19950	GC1	golgin candidate 1	0.04	OrthoFinder output from all 47 species
Adi_g012571	GC1	Golgin-type membrane tethering protein *(GC1) & original...	0.06	OrthoFinder output from all 47 species
Aev_g18873	GC1	Golgin-type membrane tethering protein *(GC1) & original...	0.02	OrthoFinder output from all 47 species
Ala_g08195	GC1	Golgin-type membrane tethering protein *(GC1) & original...	0.04	OrthoFinder output from all 47 species
Als_g16174	GC1	Golgin-type membrane tethering protein *(GC1) & original...	0.02	OrthoFinder output from all 47 species
Aop_g01809	GC1	Golgin-type membrane tethering protein *(GC1) & original...	0.03	OrthoFinder output from all 47 species
Ceric.01G051800.1	GC1, Ceric.01G051800	Golgin-type membrane tethering protein *(GC1) & original...	0.05	OrthoFinder output from all 47 species
Cre12.g517500	GC1	No description available	0.03	OrthoFinder output from all 47 species
Dcu_g03994	GC1	Golgin-type membrane tethering protein *(GC1) & original...	0.06	OrthoFinder output from all 47 species
GSVIVT01015314001	GC1	Vesicle trafficking.target membrane tethering.Golgi...	0.02	OrthoFinder output from all 47 species
Gb_23096	GC1	golgin (GC1)	0.05	OrthoFinder output from all 47 species
LOC_Os01g54119.1	GC1, LOC_Os01g54119	golgin (GC1)	0.03	OrthoFinder output from all 47 species
Len_g36025	GC1	Golgin-type membrane tethering protein *(GC1) & original...	0.02	OrthoFinder output from all 47 species
Lfl_g04906	GC1	Golgin-type membrane tethering protein *(GC1) & original...	0.02	OrthoFinder output from all 47 species
MA_110983g0010	GC1	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Ore_g36297	GC1	Golgin-type membrane tethering protein *(GC1) & original...	0.03	OrthoFinder output from all 47 species
Pir_g14543	GC1	Golgin-type membrane tethering protein *(GC1) & original...	0.03	OrthoFinder output from all 47 species
Ppi_g02316	GC1	Golgin-type membrane tethering protein *(GC1) & original...	0.02	OrthoFinder output from all 47 species
Sam_g40748	No alias	Golgin-type membrane tethering protein *(GC1) & original...	0.03	OrthoFinder output from all 47 species
Smo405724	GC1	Vesicle trafficking.target membrane tethering.Golgi...	0.06	OrthoFinder output from all 47 species
Smo415510	GC1	Vesicle trafficking.target membrane tethering.Golgi...	0.05	OrthoFinder output from all 47 species
Tin_g01154	GC1	Golgin-type membrane tethering protein *(GC1) & original...	0.06	OrthoFinder output from all 47 species
Zm00001e019844_P001	GC1, Zm00001e019844	golgin (GC1)	0.05	OrthoFinder output from all 47 species
Zm00001e029063_P003	GC1, Zm00001e029063	golgin (GC1)	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007030	Golgi organization	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0005096	GTPase activator activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006887	exocytosis	IEP	HCCA
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	HCCA
MF	GO:0008047	enzyme activator activity	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0010921	regulation of phosphatase activity	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0016197	endosomal transport	IEP	HCCA
CC	GO:0016459	myosin complex	IEP	HCCA
BP	GO:0016482	cytosolic transport	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
CC	GO:0017119	Golgi transport complex	IEP	HCCA
BP	GO:0019220	regulation of phosphate metabolic process	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
MF	GO:0019902	phosphatase binding	IEP	HCCA
MF	GO:0019903	protein phosphatase binding	IEP	HCCA
CC	GO:0030173	obsolete integral component of Golgi membrane	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
CC	GO:0030906	retromer, cargo-selective complex	IEP	HCCA
BP	GO:0031399	regulation of protein modification process	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0032940	secretion by cell	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0035303	regulation of dephosphorylation	IEP	HCCA
BP	GO:0035304	regulation of protein dephosphorylation	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	HCCA
BP	GO:0043666	regulation of phosphoprotein phosphatase activity	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046903	secretion	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0050790	regulation of catalytic activity	IEP	HCCA
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051336	regulation of hydrolase activity	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR019177	Golgin_subfamily_A_member_5	459	695

External Links

No external refs found!

Solyc12g008390.3.1 (GC1, Solyc12g008390)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation