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  5. Solyc12g006940.2.1

Solyc12g006940.2.1 (Solyc12g006940)


Aliases : Solyc12g006940

Description : RING-H2-class E3 ligase


Gene families : OG0001028 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001028_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g006940.2.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g089317 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g02511 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06292 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0062.g035250 No alias E3 ubiquitin ligase *(DRR1) & original description: CDS=522-1847 0.03 OrthoFinder output from all 47 species
Gb_16413 No alias RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Gb_28554 No alias RING-H2-class E3 ligase 0.07 OrthoFinder output from all 47 species
Lfl_g05520 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g08009 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.05 OrthoFinder output from all 47 species
Smo76977 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Zm00001e016704_P001 Zm00001e016704 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 357 398
No external refs found!