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  5. Solyc12g005920.2.1

Solyc12g005920.2.1 (FIM5, FIM2, Solyc12g005920)


Aliases : FIM5, FIM2, Solyc12g005920

Description : fimbrin actin-crosslinking factor


Gene families : OG0001639 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001639_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g005920.2.1
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
MA_168655g0010 FIM5, FIM2 fimbrin actin-crosslinking factor 0.03 OrthoFinder output from all 47 species
Msp_g10520 FIM5, FIM2 fimbrin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006457 protein folding IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001715 CH_dom 515 616
IPR001715 CH_dom 393 495
IPR001715 CH_dom 267 368
IPR001715 CH_dom 150 236
No external refs found!