1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc12g005390.2.1

Solyc12g005390.2.1 (ATMAMI, MAMI, Solyc12g005390)


Aliases : ATMAMI, MAMI, Solyc12g005390

Description : Vesicle-associated protein 4-2 OS=Arabidopsis thaliana (sp|q8vyn2|vap42_arath : 272.0)


Gene families : OG0000767 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000767_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g005390.2.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00270920 ATMAMI, MAMI,... Vesicle-associated protein 4-1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Aev_g02267 ATMAMI, MAMI contact site modulator (VST) of... 0.03 OrthoFinder output from all 47 species
Aev_g03827 No alias contact site modulator (VST) of... 0.03 OrthoFinder output from all 47 species
Aob_g08213 ATMAMI, MAMI contact site modulator (VST) of... 0.03 OrthoFinder output from all 47 species
Azfi_s0803.g087562 ATMAMI, MAMI contact site modulator (VST) of... 0.02 OrthoFinder output from all 47 species
Cba_g36679 ATMAMI, MAMI contact site modulator (VST) of... 0.03 OrthoFinder output from all 47 species
Ceric.05G096800.1 ATMAMI, MAMI,... contact site modulator (VST) of... 0.02 OrthoFinder output from all 47 species
GSVIVT01003659001 ATMAMI, MAMI Vesicle-associated protein 4-2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01014445001 ATMAMI, MAMI Vesicle-associated protein 4-1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os08g04620.1 ATMAMI, MAMI,... Vesicle-associated protein 4-2 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_97732g0010 ATMAMI, MAMI Vesicle-associated protein 4-2 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Msp_g37340 ATMAMI, MAMI contact site modulator (VST) of... 0.02 OrthoFinder output from all 47 species
Nbi_g06583 ATMAMI, MAMI contact site modulator (VST) of... 0.02 OrthoFinder output from all 47 species
Tin_g16759 ATMAMI, MAMI contact site modulator (VST) of... 0.02 OrthoFinder output from all 47 species
Zm00001e021769_P001 ATMAMI, MAMI,... Vesicle-associated protein 4-2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000535 MSP_dom 33 142
No external refs found!