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  5. Solyc11g071660.1.1

Solyc11g071660.1.1 (Solyc11g071660)


Aliases : Solyc11g071660

Description : rDNA transcriptional regulator (MAS2)


Gene families : OG0004955 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004955_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g071660.1.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00226580 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT4G02720 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.05 OrthoFinder output from all 47 species
Aob_g21695 No alias regulatory protein *(MAS2) of rDNA transcription &... 0.02 OrthoFinder output from all 47 species
Aop_g25509 No alias regulatory protein *(MAS2) of rDNA transcription &... 0.02 OrthoFinder output from all 47 species
Cba_g04063 No alias regulatory protein *(MAS2) of rDNA transcription &... 0.03 OrthoFinder output from all 47 species
Ceric.24G045500.1 Ceric.24G045500 regulatory protein *(MAS2) of rDNA transcription &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000194.38 No alias No description available 0.07 OrthoFinder output from all 47 species
Cre01.g032250 No alias No description available 0.03 OrthoFinder output from all 47 species
Dcu_g01465 No alias regulatory protein *(MAS2) of rDNA transcription &... 0.03 OrthoFinder output from all 47 species
GSVIVT01001165001 No alias No description available 0.07 OrthoFinder output from all 47 species
LOC_Os09g28220.1 LOC_Os09g28220 rDNA transcriptional regulator (MAS2) 0.03 OrthoFinder output from all 47 species
Mp7g16690.1 No alias rDNA transcriptional regulator (MAS2) 0.06 OrthoFinder output from all 47 species
Pnu_g10956 No alias regulatory protein *(MAS2) of rDNA transcription &... 0.03 OrthoFinder output from all 47 species
Pp3c9_17960V3.1 Pp3c9_17960 No annotation 0.02 OrthoFinder output from all 47 species
Sam_g12201 No alias regulatory protein *(MAS2) of rDNA transcription &... 0.02 OrthoFinder output from all 47 species
Spa_g15449 No alias regulatory protein *(MAS2) of rDNA transcription &... 0.03 OrthoFinder output from all 47 species
Spa_g51545 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR009269 NKAP_C 413 511
No external refs found!