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  5. Solyc11g068870.2.1

Solyc11g068870.2.1 (Solyc11g068870)


Aliases : Solyc11g068870

Description : no hits & (original description: none)


Gene families : OG0005764 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005764_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g068870.2.1

Target Alias Description ECC score Gene Family Method Actions
Aob_g16294 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g02587 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cre17.g734000 No alias No description available 0.02 OrthoFinder output from all 47 species
Dde_g11491 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os04g35910.1 LOC_Os04g35910 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Tin_g10698 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006914 autophagy IEP HCCA
BP GO:0016073 snRNA metabolic process IEP HCCA
BP GO:0016180 snRNA processing IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0034472 snRNA 3'-end processing IEP HCCA
BP GO:0034477 U6 snRNA 3'-end processing IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR018612 NSRP1_N 59 175
No external refs found!