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  5. Solyc11g067280.2.1

Solyc11g067280.2.1 (Solyc11g067280)


Aliases : Solyc11g067280

Description : G2-like GARP transcription factor


Gene families : OG0000036 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g067280.2.1

Target Alias Description ECC score Gene Family Method Actions
Aev_g12428 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01033381001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
Gb_05469 No alias G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species
Len_g15642 No alias GARP subgroup PHL transcription factor & original... 0.04 OrthoFinder output from all 47 species
Msp_g19173 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Nbi_g02133 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Pir_g39083 No alias GARP subgroup PHL transcription factor & original... 0.03 OrthoFinder output from all 47 species
Pnu_g06354 No alias GARP subgroup PHL transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sam_g04137 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e033396_P003 PHR1, AtPHR1,... G2-like GARP transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000976 transcription cis-regulatory region binding IEP HCCA
MF GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding IEP HCCA
MF GO:0001067 transcription regulatory region nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0032422 purine-rich negative regulatory element binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:1990837 sequence-specific double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 49 99
IPR025756 Myb_CC_LHEQLE 133 178
No external refs found!