Aliases : ATLIG1, LIG1, Solyc11g066370
Description : DNA replication DNA ligase (LIG1). DNA ligase (LIG1)
Gene families : OG0001904 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001904_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00102p00018040 | ATLIG1, LIG1,... | DNA damage response.DNA repair mechanisms.base excision... | 0.03 | OrthoFinder output from all 47 species | |
Aev_g20608 | AtLIG6, LIG6 | EC_6.5 ligase forming phosphoric ester bond & original... | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene34972.t1 | ATLIG1, LIG1,... | EC_6.5 ligase forming phosphoric ester bond & original... | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0068.g036476 | ATLIG1, LIG1 | EC_6.5 ligase forming phosphoric ester bond & original... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.28G053000.1 | ATLIG1, LIG1,... | EC_6.5 ligase forming phosphoric ester bond & original... | 0.03 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000754.31 | ATLIG1, LIG1 | DNA ligase 1 OS=Arabidopsis thaliana | 0.01 | OrthoFinder output from all 47 species | |
Cre06.g278177 | AtLIG6, LIG6 | DNA ligase 6 OS=Arabidopsis thaliana | 0.01 | OrthoFinder output from all 47 species | |
Cre07.g325716 | ATLIG1, LIG1 | DNA damage response.DNA repair mechanisms.base excision... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g17352 | ATLIG1, LIG1 | EC_6.5 ligase forming phosphoric ester bond & original... | 0.06 | OrthoFinder output from all 47 species | |
GSVIVT01031470001 | ATLIG1, LIG1 | DNA damage response.DNA repair mechanisms.base excision... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os10g34750.1 | ATLIG1, LIG1,... | DNA replication DNA ligase (LIG1). DNA ligase (LIG1) | 0.03 | OrthoFinder output from all 47 species | |
MA_10044742g0010 | ATLIG1, LIG1 | DNA ligase 1 OS=Arabidopsis thaliana... | 0.04 | OrthoFinder output from all 47 species | |
MA_301748g0010 | ATLIG1, LIG1 | DNA ligase 1 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
Mp1g15320.1 | ATLIG1, LIG1 | DNA replication DNA ligase (LIG1). DNA ligase (LIG1) | 0.05 | OrthoFinder output from all 47 species | |
Ore_g16105 | ATLIG1, LIG1 | EC_6.5 ligase forming phosphoric ester bond & original... | 0.04 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0041.g012541 | ATLIG1, LIG1 | EC_6.5 ligase forming phosphoric ester bond & original... | 0.02 | OrthoFinder output from all 47 species | |
Tin_g07751 | ATLIG1, LIG1 | EC_6.5 ligase forming phosphoric ester bond & original... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e004508_P002 | ATLIG1, LIG1,... | DNA replication DNA ligase (LIG1). DNA ligase (LIG1) | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0003910 | DNA ligase (ATP) activity | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
BP | GO:0006281 | DNA repair | IEA | Interproscan |
BP | GO:0006310 | DNA recombination | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000075 | cell cycle checkpoint signaling | IEP | HCCA |
CC | GO:0000808 | origin recognition complex | IEP | HCCA |
MF | GO:0003678 | DNA helicase activity | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0005049 | nuclear export signal receptor activity | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
CC | GO:0005664 | nuclear origin of replication recognition complex | IEP | HCCA |
BP | GO:0006260 | DNA replication | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
BP | GO:0007088 | regulation of mitotic nuclear division | IEP | HCCA |
BP | GO:0007093 | mitotic cell cycle checkpoint signaling | IEP | HCCA |
BP | GO:0007094 | mitotic spindle assembly checkpoint signaling | IEP | HCCA |
BP | GO:0007346 | regulation of mitotic cell cycle | IEP | HCCA |
MF | GO:0008092 | cytoskeletal protein binding | IEP | HCCA |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
BP | GO:0010564 | regulation of cell cycle process | IEP | HCCA |
BP | GO:0010639 | negative regulation of organelle organization | IEP | HCCA |
BP | GO:0010948 | negative regulation of cell cycle process | IEP | HCCA |
BP | GO:0010965 | regulation of mitotic sister chromatid separation | IEP | HCCA |
MF | GO:0015631 | tubulin binding | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | HCCA |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | HCCA |
CC | GO:0019867 | outer membrane | IEP | HCCA |
MF | GO:0019899 | enzyme binding | IEP | HCCA |
BP | GO:0022402 | cell cycle process | IEP | HCCA |
BP | GO:0030071 | regulation of mitotic metaphase/anaphase transition | IEP | HCCA |
BP | GO:0031577 | spindle checkpoint signaling | IEP | HCCA |
MF | GO:0031625 | ubiquitin protein ligase binding | IEP | HCCA |
BP | GO:0033043 | regulation of organelle organization | IEP | HCCA |
BP | GO:0033044 | regulation of chromosome organization | IEP | HCCA |
BP | GO:0033045 | regulation of sister chromatid segregation | IEP | HCCA |
BP | GO:0033046 | negative regulation of sister chromatid segregation | IEP | HCCA |
BP | GO:0033047 | regulation of mitotic sister chromatid segregation | IEP | HCCA |
BP | GO:0033048 | negative regulation of mitotic sister chromatid segregation | IEP | HCCA |
MF | GO:0043015 | gamma-tubulin binding | IEP | HCCA |
MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | HCCA |
BP | GO:0045786 | negative regulation of cell cycle | IEP | HCCA |
BP | GO:0045839 | negative regulation of mitotic nuclear division | IEP | HCCA |
BP | GO:0045841 | negative regulation of mitotic metaphase/anaphase transition | IEP | HCCA |
BP | GO:0045930 | negative regulation of mitotic cell cycle | IEP | HCCA |
BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
BP | GO:0048523 | negative regulation of cellular process | IEP | HCCA |
BP | GO:0051128 | regulation of cellular component organization | IEP | HCCA |
BP | GO:0051129 | negative regulation of cellular component organization | IEP | HCCA |
BP | GO:0051726 | regulation of cell cycle | IEP | HCCA |
BP | GO:0051783 | regulation of nuclear division | IEP | HCCA |
BP | GO:0051784 | negative regulation of nuclear division | IEP | HCCA |
BP | GO:0051983 | regulation of chromosome segregation | IEP | HCCA |
BP | GO:0051985 | negative regulation of chromosome segregation | IEP | HCCA |
BP | GO:0071173 | spindle assembly checkpoint signaling | IEP | HCCA |
BP | GO:0071174 | mitotic spindle checkpoint signaling | IEP | HCCA |
MF | GO:0140104 | molecular carrier activity | IEP | HCCA |
MF | GO:0140142 | nucleocytoplasmic carrier activity | IEP | HCCA |
MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
BP | GO:1901987 | regulation of cell cycle phase transition | IEP | HCCA |
BP | GO:1901988 | negative regulation of cell cycle phase transition | IEP | HCCA |
BP | GO:1901990 | regulation of mitotic cell cycle phase transition | IEP | HCCA |
BP | GO:1901991 | negative regulation of mitotic cell cycle phase transition | IEP | HCCA |
BP | GO:1902099 | regulation of metaphase/anaphase transition of cell cycle | IEP | HCCA |
BP | GO:1902100 | negative regulation of metaphase/anaphase transition of cell cycle | IEP | HCCA |
BP | GO:1903047 | mitotic cell cycle process | IEP | HCCA |
BP | GO:1905818 | regulation of chromosome separation | IEP | HCCA |
BP | GO:1905819 | negative regulation of chromosome separation | IEP | HCCA |
BP | GO:2000816 | negative regulation of mitotic sister chromatid separation | IEP | HCCA |
BP | GO:2001251 | negative regulation of chromosome organization | IEP | HCCA |
No external refs found! |