Solyc11g066370.2.1 (ATLIG1, LIG1, Solyc11g066370)


Aliases : ATLIG1, LIG1, Solyc11g066370

Description : DNA replication DNA ligase (LIG1). DNA ligase (LIG1)


Gene families : OG0001904 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001904_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g066370.2.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00102p00018040 ATLIG1, LIG1,... DNA damage response.DNA repair mechanisms.base excision... 0.03 OrthoFinder output from all 47 species
Aev_g20608 AtLIG6, LIG6 EC_6.5 ligase forming phosphoric ester bond & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene34972.t1 ATLIG1, LIG1,... EC_6.5 ligase forming phosphoric ester bond & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0068.g036476 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.04 OrthoFinder output from all 47 species
Ceric.28G053000.1 ATLIG1, LIG1,... EC_6.5 ligase forming phosphoric ester bond & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000754.31 ATLIG1, LIG1 DNA ligase 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre06.g278177 AtLIG6, LIG6 DNA ligase 6 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre07.g325716 ATLIG1, LIG1 DNA damage response.DNA repair mechanisms.base excision... 0.03 OrthoFinder output from all 47 species
Dcu_g17352 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.06 OrthoFinder output from all 47 species
GSVIVT01031470001 ATLIG1, LIG1 DNA damage response.DNA repair mechanisms.base excision... 0.02 OrthoFinder output from all 47 species
LOC_Os10g34750.1 ATLIG1, LIG1,... DNA replication DNA ligase (LIG1). DNA ligase (LIG1) 0.03 OrthoFinder output from all 47 species
MA_10044742g0010 ATLIG1, LIG1 DNA ligase 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_301748g0010 ATLIG1, LIG1 DNA ligase 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp1g15320.1 ATLIG1, LIG1 DNA replication DNA ligase (LIG1). DNA ligase (LIG1) 0.05 OrthoFinder output from all 47 species
Ore_g16105 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0041.g012541 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.02 OrthoFinder output from all 47 species
Tin_g07751 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.04 OrthoFinder output from all 47 species
Zm00001e004508_P002 ATLIG1, LIG1,... DNA replication DNA ligase (LIG1). DNA ligase (LIG1) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003910 DNA ligase (ATP) activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
BP GO:0006310 DNA recombination IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP HCCA
CC GO:0000808 origin recognition complex IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005049 nuclear export signal receptor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005664 nuclear origin of replication recognition complex IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0007088 regulation of mitotic nuclear division IEP HCCA
BP GO:0007093 mitotic cell cycle checkpoint signaling IEP HCCA
BP GO:0007094 mitotic spindle assembly checkpoint signaling IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0010639 negative regulation of organelle organization IEP HCCA
BP GO:0010948 negative regulation of cell cycle process IEP HCCA
BP GO:0010965 regulation of mitotic sister chromatid separation IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP HCCA
BP GO:0031577 spindle checkpoint signaling IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0033045 regulation of sister chromatid segregation IEP HCCA
BP GO:0033046 negative regulation of sister chromatid segregation IEP HCCA
BP GO:0033047 regulation of mitotic sister chromatid segregation IEP HCCA
BP GO:0033048 negative regulation of mitotic sister chromatid segregation IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0045786 negative regulation of cell cycle IEP HCCA
BP GO:0045839 negative regulation of mitotic nuclear division IEP HCCA
BP GO:0045841 negative regulation of mitotic metaphase/anaphase transition IEP HCCA
BP GO:0045930 negative regulation of mitotic cell cycle IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051129 negative regulation of cellular component organization IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0051783 regulation of nuclear division IEP HCCA
BP GO:0051784 negative regulation of nuclear division IEP HCCA
BP GO:0051983 regulation of chromosome segregation IEP HCCA
BP GO:0051985 negative regulation of chromosome segregation IEP HCCA
BP GO:0071173 spindle assembly checkpoint signaling IEP HCCA
BP GO:0071174 mitotic spindle checkpoint signaling IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901988 negative regulation of cell cycle phase transition IEP HCCA
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1901991 negative regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP HCCA
BP GO:1902100 negative regulation of metaphase/anaphase transition of cell cycle IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
BP GO:1905818 regulation of chromosome separation IEP HCCA
BP GO:1905819 negative regulation of chromosome separation IEP HCCA
BP GO:2000816 negative regulation of mitotic sister chromatid separation IEP HCCA
BP GO:2001251 negative regulation of chromosome organization IEP HCCA
InterPro domains Description Start Stop
IPR012308 DNA_ligase_ATP-dep_N 188 364
IPR012310 DNA_ligase_ATP-dep_cent 430 634
IPR012309 DNA_ligase_ATP-dep_C 659 770
No external refs found!