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  5. Solyc11g020810.2.1

Solyc11g020810.2.1 (Solyc11g020810)


Aliases : Solyc11g020810

Description : no hits & (original description: none)


Gene families : OG0004018 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004018_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g020810.2.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00229900 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT4G25730 No alias FtsJ-like methyltransferase family protein 0.17 OrthoFinder output from all 47 species
Adi_g084654 No alias MRM2-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g14193 No alias MRM2-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g22298 No alias MRM2-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007467 No alias MRM2-type rRNA methyltransferase & original description:... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000217.16 No alias No description available 0.03 OrthoFinder output from all 47 species
Cre12.g529500 No alias No description available 0.19 OrthoFinder output from all 47 species
GSVIVT01023801001 No alias No description available 0.09 OrthoFinder output from all 47 species
LOC_Os05g49230.1 LOC_Os05g49230 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
MA_10429557g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_158214g0010 No alias no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Mp8g14990.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Pir_g36296 No alias MRM2-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15947 No alias MRM2-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Smo141188 No alias No description available 0.03 OrthoFinder output from all 47 species
Smo404107 No alias No description available 0.09 OrthoFinder output from all 47 species
Smo78506 No alias No description available 0.03 OrthoFinder output from all 47 species
Spa_g06497 No alias MRM2-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e026556_P001 Zm00001e026556 no hits & (original description: none) 0.15 OrthoFinder output from all 47 species
Zm00001e032456_P001 Zm00001e032456 no hits & (original description: none) 0.16 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
BP GO:0032259 methylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002877 RNA_MeTrfase_FtsJ_dom 22 199
IPR024576 rRNA_MeTfrase_Spb1_DUF3381 234 385
IPR012920 rRNA_MeTfrase_SPB1-like_C 602 799
No external refs found!