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  5. Solyc11g011290.3.1

Solyc11g011290.3.1 (Solyc11g011290)


Aliases : Solyc11g011290

Description : no hits & (original description: none)


Gene families : OG0001248 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001248_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g011290.3.1
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
AT2G22620 No alias Rhamnogalacturonate lyase family protein 0.03 OrthoFinder output from all 47 species
AT4G37950 No alias Rhamnogalacturonate lyase family protein 0.06 OrthoFinder output from all 47 species
AT4G38030 No alias Rhamnogalacturonate lyase family protein 0.04 OrthoFinder output from all 47 species
Adi_g126576 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g21152 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g18808 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
GSVIVT01006298001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01006302001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_00786 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_00787 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os08g44040.1 LOC_Os08g44040 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os12g03790.1 LOC_Os12g03790 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g19716 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp2g13570.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp2g13580.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp5g20220.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp7g11130.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g08194 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo413794 No alias No description available 0.02 OrthoFinder output from all 47 species
Smo413798 No alias No description available 0.06 OrthoFinder output from all 47 species
Solyc05g051350.2.1 Solyc05g051350 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e013992_P006 Zm00001e013992 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e021493_P001 Zm00001e021493 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR029411 RG-lyase_III 443 631
IPR029413 RG-lyase_II 357 430
IPR010325 Rhamnogal_lyase 42 232
No external refs found!