Solyc11g008540.3.1 (ATDCL2, DCL2, Solyc11g008540)

Aliases : ATDCL2, DCL2, Solyc11g008540

Description : Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana (sp|q3ebc8|dcl2_arath : 1140.0)

Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc11g008540.3.1

Target	Alias	Description	ECC score	Gene Family Method
Cre02.g141000	DCL1, CAF,...	Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Ehy_g15595	DCL1, CAF,...	endoribonuclease *(DCL3) & original description: none	0.02	OrthoFinder output from all 47 species
Gb_37867	DCL1, CAF,...	Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp....	0.03	OrthoFinder output from all 47 species
Gb_37868	DCL1, CAF,...	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
LOC_Os01g37050.1	ATRTL2, RTL2,...	Ribonuclease 3-like protein 1 OS=Oryza sativa subsp....	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	IEA	Interproscan
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEA	Interproscan
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000999	RNase_III_dom	728	846
IPR000999	RNase_III_dom	918	1029
IPR001650	Helicase_C	96	215
IPR005034	Dicer_dimerisation_dom	285	365
IPR003100	PAZ_dom	554	685

External Links

No external refs found!

Solyc11g008540.3.1 (ATDCL2, DCL2, Solyc11g008540)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation