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  5. Solyc11g008490.3.1

Solyc11g008490.3.1 (APUM4, PUM4, Solyc11g008490)


Aliases : APUM4, PUM4, Solyc11g008490

Description : Pumilio homolog 4 OS=Arabidopsis thaliana (sp|q9ss47|pum4_arath : 627.0)


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g008490.3.1

Target Alias Description ECC score Gene Family Method Actions
Aev_g07958 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g25024 APUM4, PUM4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g31364 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10325 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0164.g024072 APUM6, PUM6 not classified & original description: CDS=170-874 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006082 organic acid metabolic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 682 714
IPR001313 Pumilio_RNA-bd_rpt 761 787
IPR001313 Pumilio_RNA-bd_rpt 646 678
IPR001313 Pumilio_RNA-bd_rpt 575 607
IPR001313 Pumilio_RNA-bd_rpt 791 823
IPR001313 Pumilio_RNA-bd_rpt 840 865
IPR001313 Pumilio_RNA-bd_rpt 609 641
IPR001313 Pumilio_RNA-bd_rpt 718 750
IPR012940 NABP 468 565
No external refs found!