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Aliases : SPT5L, KTF1, Solyc11g008150
Description : RNA polymerase-V auxiliary factor (KTF1/SPT5L)
Gene families : OG0002736 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002736_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc11g008150.3.1 | |
| Cluster | HCCA: Cluster_74 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00002p00250180 | GTA02, GTA2,... | RNA biosynthesis.RNA polymerase II-dependent... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s03307p00006510 | GTA02, GTA2,... | Putative transcription elongation factor SPT5 homolog 1... | 0.02 | OrthoFinder output from all 47 species | |
| AT4G08350 | GTA02, GTA2 | global transcription factor group A2 | 0.03 | OrthoFinder output from all 47 species | |
| AT5G04290 | SPT5L, KTF1 | kow domain-containing transcription factor 1 | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g122061 | GTA02, GTA2 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g13254 | GTA02, GTA2 | component *(SPT5) of SPT4/5 transcription elongation... | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g11309 | GTA02, GTA2 | component *(SPT5) of SPT4/5 transcription elongation... | 0.05 | OrthoFinder output from all 47 species | |
| Als_g05130 | GTA02, GTA2 | component *(SPT5) of SPT4/5 transcription elongation... | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g07106 | GTA02, GTA2 | component *(SPT5) of SPT4/5 transcription elongation... | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0078.g038202 | GTA02, GTA2 | component *(SPT5) of SPT4/5 transcription elongation... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.26G072300.1 | GTA02, GTA2,... | component *(SPT5) of SPT4/5 transcription elongation... | 0.05 | OrthoFinder output from all 47 species | |
| Dde_g07477 | GTA02, GTA2 | component *(SPT5) of SPT4/5 transcription elongation... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01010022001 | GTA02, GTA2 | RNA biosynthesis.RNA polymerase II-dependent... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01016203001 | SPT5L, KTF1 | Chromatin organisation.DNA methylation.canonical... | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os05g43060.1 | SPT5L, KTF1,... | RNA polymerase-V auxiliary factor (KTF1/SPT5L) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os06g10620.1 | GTA02, GTA2,... | component SPT5 of SPT4/5 transcription elongation factor complex | 0.03 | OrthoFinder output from all 47 species | |
| Len_g12137 | GTA02, GTA2 | component *(SPT5) of SPT4/5 transcription elongation... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g05703 | GTA02, GTA2 | component *(SPT5) of SPT4/5 transcription elongation... | 0.05 | OrthoFinder output from all 47 species | |
| MA_10434986g0010 | GTA02, GTA2 | RNA polymerase-V auxiliary factor (KTF1/SPT5L).... | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g23875 | GTA02, GTA2 | component *(SPT5) of SPT4/5 transcription elongation... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g37710 | No alias | component *(SPT5) of SPT4/5 transcription elongation... | 0.03 | OrthoFinder output from all 47 species | |
| Smo449156 | GTA02, GTA2 | RNA biosynthesis.RNA polymerase II-dependent... | 0.02 | OrthoFinder output from all 47 species | |
| Smo96727 | GTA02, GTA2 | RNA biosynthesis.RNA polymerase II-dependent... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g04271 | GTA02, GTA2 | component *(SPT5) of SPT4/5 transcription elongation... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g41245 | GTA02, GTA2 | component *(SF3B2) of splicing factor 3B complex &... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e027389_P004 | SPT5L, KTF1,... | RNA polymerase-V auxiliary factor (KTF1/SPT5L) | 0.06 | OrthoFinder output from all 47 species | |
| Zm00001e030789_P001 | GTA02, GTA2,... | component SPT5 of SPT4/5 transcription elongation factor complex | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e032078_P001 | SPT5L, KTF1,... | RNA polymerase-V auxiliary factor (KTF1/SPT5L) | 0.07 | OrthoFinder output from all 47 species | |
| Zm00001e036210_P001 | GTA02, GTA2,... | component SPT5 of SPT4/5 transcription elongation factor complex | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| No external refs found! |