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  5. Solyc11g007280.3.1

Solyc11g007280.3.1 (PDR6, ATPDR6, Solyc11g007280)


Aliases : PDR6, ATPDR6, Solyc11g007280

Description : subfamily ABCG transporter


Gene families : OG0000071 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g007280.3.1
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AT1G66950 PDR11, ATPDR11 pleiotropic drug resistance 11 0.03 OrthoFinder output from all 47 species
Aev_g14775 ABCG40, PDR12,... subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Als_g47419 PDR11, ATPDR11 subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g22545 PDR6, ATPDR6 subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0077.g038045 PEN3, ABCG36,... subfamily ABCG transporter & original description: CDS=1-4176 0.02 OrthoFinder output from all 47 species
Cba_g10025 ABCG40, PDR12,... subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19030 PEN3, ABCG36,... subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13671 PEN3, ABCG36,... subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01017337001 ABCG40, PDR12,... ABC transporter G family member 40 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os08g29570.1 ABCG40, PDR12,... subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
LOC_Os09g16449.1 ABCG40, PDR12,... subfamily ABCG transporter 0.04 OrthoFinder output from all 47 species
Mp2g07030.1 PDR6, ATPDR6 subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004775 PDR6, ATPDR6 subfamily ABCG transporter & original description: CDS=697-5283 0.02 OrthoFinder output from all 47 species
Solyc02g081870.4.1 ATPDR3, PDR3,... abscisic acid transporter (ABCG31). subfamily ABCG transporter 0.06 OrthoFinder output from all 47 species
Solyc11g007290.1.1 PDR11, ATPDR11,... subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
InterPro domains Description Start Stop
IPR013525 ABC_2_trans 529 741
IPR013525 ABC_2_trans 1192 1405
IPR013581 PDR_assoc 746 811
IPR003439 ABC_transporter-like_ATP-bd 895 1047
IPR029481 ABC_trans_N 76 168
IPR003439 ABC_transporter-like_ATP-bd 193 375
No external refs found!