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  5. Solyc11g007170.2.1

Solyc11g007170.2.1 (VPS4, SKD1, ATSKD1,...)


Aliases : VPS4, SKD1, ATSKD1, Solyc11g007170

Description : serine carboxypeptidase. ATPase component VPS4/SKD1 of VPS4-VTA1 ESCRT-disassembly complex


Gene families : OG0002846 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002846_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g007170.2.1
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
Adi_g039524 VPS4, SKD1, ATSKD1 EC_3.6 hydrolase acting on acid anhydride & original... 0.02 OrthoFinder output from all 47 species
Adi_g114328 VPS4, SKD1, ATSKD1 EC_3.6 hydrolase acting on acid anhydride & original... 0.02 OrthoFinder output from all 47 species
Ala_g22503 VPS4, SKD1, ATSKD1 EC_3.6 hydrolase acting on acid anhydride & original... 0.02 OrthoFinder output from all 47 species
Ceric.04G022900.1 VPS4, SKD1,... EC_3.6 hydrolase acting on acid anhydride & original... 0.03 OrthoFinder output from all 47 species
Cre02.g079300 VPS4, SKD1, ATSKD1 Vesicle trafficking.endomembrane trafficking.ESCRT... 0.02 OrthoFinder output from all 47 species
Dac_g03336 VPS4, SKD1, ATSKD1 EC_3.6 hydrolase acting on acid anhydride & original... 0.03 OrthoFinder output from all 47 species
Dde_g02234 VPS4, SKD1, ATSKD1 EC_3.6 hydrolase acting on acid anhydride & original... 0.02 OrthoFinder output from all 47 species
LOC_Os01g04814.1 VPS4, SKD1,... ATPase component VPS4/SKD1 of VPS4-VTA1 ESCRT-disassembly complex 0.03 OrthoFinder output from all 47 species
Lfl_g27517 VPS4, SKD1, ATSKD1 EC_3.6 hydrolase acting on acid anhydride & original... 0.03 OrthoFinder output from all 47 species
MA_140297g0010 VPS4, SKD1, ATSKD1 Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1... 0.03 OrthoFinder output from all 47 species
Mp8g01610.1 VPS4, SKD1, ATSKD1 ATPase component VPS4/SKD1 of VPS4-VTA1 ESCRT-disassembly complex 0.03 OrthoFinder output from all 47 species
Msp_g11706 VPS4, SKD1, ATSKD1 EC_3.6 hydrolase acting on acid anhydride & original... 0.03 OrthoFinder output from all 47 species
Nbi_g04244 VPS4, SKD1, ATSKD1 EC_3.6 hydrolase acting on acid anhydride & original... 0.02 OrthoFinder output from all 47 species
Sam_g37514 No alias EC_3.6 hydrolase acting on acid anhydride & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
InterPro domains Description Start Stop
IPR007330 MIT_dom 7 70
IPR003959 ATPase_AAA_core 169 299
IPR015415 Vps4_C 369 433
IPR041569 AAA_lid_3 323 357
No external refs found!